Gene : AT4G08400 A. thaliana TAIR10
Defline:  (1 of 16) PF04554 - Extensin-like region (Extensin_2) Genomic Order:  656
Name:  ? AT4G08400 Secondary Identifier:  ? PAC:19645018
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G08400 0.5kb upstream 0.5kb upstream 2042 true Chr4: 5323800-5325841 Arabidopsis thaliana
AT4G08400 0.5kb upstream 0.5kb upstream 500 false Chr4: 5325342-5325841 Arabidopsis thaliana
AT4G08400 0.5kb downstream 0.5kb downstream 2042 true Chr4: 5323300-5325341 Arabidopsis thaliana
AT4G08400 0.5kb downstream 0.5kb downstream 500 false Chr4: 5323300-5323799 Arabidopsis thaliana
AT4G08400 1.0kb upstream 1.0kb upstream 2542 true Chr4: 5323800-5326341 Arabidopsis thaliana
AT4G08400 1.0kb upstream 1.0kb upstream 1000 false Chr4: 5325342-5326341 Arabidopsis thaliana
AT4G08400 1.0kb downstream 1.0kb downstream 2542 true Chr4: 5322800-5325341 Arabidopsis thaliana
AT4G08400 1.0kb downstream 1.0kb downstream 1000 false Chr4: 5322800-5323799 Arabidopsis thaliana
AT4G08400 2.0kb upstream 2.0kb upstream 3542 true Chr4: 5323800-5327341 Arabidopsis thaliana
AT4G08400 2.0kb upstream 2.0kb upstream 2000 false Chr4: 5325342-5327341 Arabidopsis thaliana
AT4G08400 2.0kb downstream 2.0kb downstream 3542 true Chr4: 5321800-5325341 Arabidopsis thaliana
AT4G08400 2.0kb downstream 2.0kb downstream 2000 false Chr4: 5321800-5323799 Arabidopsis thaliana
AT4G08400 5.0kb upstream 5.0kb upstream 6542 true Chr4: 5323800-5330341 Arabidopsis thaliana
AT4G08400 5.0kb upstream 5.0kb upstream 5000 false Chr4: 5325342-5330341 Arabidopsis thaliana
AT4G08400 5.0kb downstream 5.0kb downstream 6542 true Chr4: 5318800-5325341 Arabidopsis thaliana
AT4G08400 5.0kb downstream 5.0kb downstream 5000 false Chr4: 5318800-5323799 Arabidopsis thaliana
AT4G08400 10.0kb upstream 10.0kb upstream 11542 true Chr4: 5323800-5335341 Arabidopsis thaliana
AT4G08400 10.0kb upstream 10.0kb upstream 10000 false Chr4: 5325342-5335341 Arabidopsis thaliana
AT4G08400 10.0kb downstream 10.0kb downstream 11542 true Chr4: 5313800-5325341 Arabidopsis thaliana
AT4G08400 10.0kb downstream 10.0kb downstream 10000 false Chr4: 5313800-5323799 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121502988 5273 Angiosperm View MSA
122344069 5261 Brassicaceae View MSA
123784125 5264 Brassicales-Malvales View MSA
124282324 5266 SBM View MSA
124136946 5268 Malvidae View MSA
123864728 5270 Rosid View MSA
123450013 5271 Pentapetalae View MSA
122485540 5272 Eudicot View MSA
120776284 5274 Embryophyte View MSA
122818562 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.01     Low Low
cufflinks 0.189     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.24     Low  
cufflinks 0.018     Low  
cufflinks 0.541       High

0 Strain