Gene : AHL1 A. thaliana TAIR10
Primary Identifier:  ? AT4G12080 Defline:  (1 of 2) PTHR31500:SF7 - AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN-RELATED
Genomic Order:  1039 Name:  ? AT4G12080
Secondary Identifier:  ? PAC:19648240
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G12080 0.5kb upstream 0.5kb upstream 2776 true Chr4: 7238719-7241494 Arabidopsis thaliana
AT4G12080 0.5kb upstream 0.5kb upstream 500 false Chr4: 7238719-7239218 Arabidopsis thaliana
AT4G12080 0.5kb downstream 0.5kb downstream 2776 true Chr4: 7239219-7241994 Arabidopsis thaliana
AT4G12080 0.5kb downstream 0.5kb downstream 500 false Chr4: 7241495-7241994 Arabidopsis thaliana
AT4G12080 1.0kb upstream 1.0kb upstream 3276 true Chr4: 7238219-7241494 Arabidopsis thaliana
AT4G12080 1.0kb upstream 1.0kb upstream 1000 false Chr4: 7238219-7239218 Arabidopsis thaliana
AT4G12080 1.0kb downstream 1.0kb downstream 3276 true Chr4: 7239219-7242494 Arabidopsis thaliana
AT4G12080 1.0kb downstream 1.0kb downstream 1000 false Chr4: 7241495-7242494 Arabidopsis thaliana
AT4G12080 2.0kb upstream 2.0kb upstream 4276 true Chr4: 7237219-7241494 Arabidopsis thaliana
AT4G12080 2.0kb upstream 2.0kb upstream 2000 false Chr4: 7237219-7239218 Arabidopsis thaliana
AT4G12080 2.0kb downstream 2.0kb downstream 4276 true Chr4: 7239219-7243494 Arabidopsis thaliana
AT4G12080 2.0kb downstream 2.0kb downstream 2000 false Chr4: 7241495-7243494 Arabidopsis thaliana
AT4G12080 5.0kb upstream 5.0kb upstream 7276 true Chr4: 7234219-7241494 Arabidopsis thaliana
AT4G12080 5.0kb upstream 5.0kb upstream 5000 false Chr4: 7234219-7239218 Arabidopsis thaliana
AT4G12080 5.0kb downstream 5.0kb downstream 7276 true Chr4: 7239219-7246494 Arabidopsis thaliana
AT4G12080 5.0kb downstream 5.0kb downstream 5000 false Chr4: 7241495-7246494 Arabidopsis thaliana
AT4G12080 10.0kb upstream 10.0kb upstream 12276 true Chr4: 7229219-7241494 Arabidopsis thaliana
AT4G12080 10.0kb upstream 10.0kb upstream 10000 false Chr4: 7229219-7239218 Arabidopsis thaliana
AT4G12080 10.0kb downstream 10.0kb downstream 12276 true Chr4: 7239219-7251494 Arabidopsis thaliana
AT4G12080 10.0kb downstream 10.0kb downstream 10000 false Chr4: 7241495-7251494 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372299 5261 Brassicaceae View MSA
123841387 5264 Brassicales-Malvales View MSA
124348766 5266 SBM View MSA
124248140 5268 Malvidae View MSA
124071035 5270 Rosid View MSA
123753724 5271 Pentapetalae View MSA
122796118 5272 Eudicot View MSA
122049850 5273 Angiosperm View MSA
121348420 5274 Embryophyte View MSA
123380859 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.788        
cufflinks 25.077        
cufflinks 0.578       Low
cufflinks 36.626     High High
cufflinks 1.243        
cufflinks 23.437        

0 Strain