Gene : AT4G11790 A. thaliana TAIR10
Defline:  (1 of 1) PTHR23138//PTHR23138:SF97 - RAN BINDING PROTEIN // NUCLEAR PORE COMPLEX PROTEIN NUP50 Genomic Order:  1006
Name:  ? AT4G11790 Secondary Identifier:  ? PAC:19644099
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G11790 0.5kb upstream 0.5kb upstream 3623 true Chr4: 7089853-7093475 Arabidopsis thaliana
AT4G11790 0.5kb upstream 0.5kb upstream 500 false Chr4: 7089853-7090352 Arabidopsis thaliana
AT4G11790 0.5kb downstream 0.5kb downstream 3623 true Chr4: 7090353-7093975 Arabidopsis thaliana
AT4G11790 0.5kb downstream 0.5kb downstream 500 false Chr4: 7093476-7093975 Arabidopsis thaliana
AT4G11790 1.0kb upstream 1.0kb upstream 4123 true Chr4: 7089353-7093475 Arabidopsis thaliana
AT4G11790 1.0kb upstream 1.0kb upstream 1000 false Chr4: 7089353-7090352 Arabidopsis thaliana
AT4G11790 1.0kb downstream 1.0kb downstream 4123 true Chr4: 7090353-7094475 Arabidopsis thaliana
AT4G11790 1.0kb downstream 1.0kb downstream 1000 false Chr4: 7093476-7094475 Arabidopsis thaliana
AT4G11790 2.0kb upstream 2.0kb upstream 5123 true Chr4: 7088353-7093475 Arabidopsis thaliana
AT4G11790 2.0kb upstream 2.0kb upstream 2000 false Chr4: 7088353-7090352 Arabidopsis thaliana
AT4G11790 2.0kb downstream 2.0kb downstream 5123 true Chr4: 7090353-7095475 Arabidopsis thaliana
AT4G11790 2.0kb downstream 2.0kb downstream 2000 false Chr4: 7093476-7095475 Arabidopsis thaliana
AT4G11790 5.0kb upstream 5.0kb upstream 8123 true Chr4: 7085353-7093475 Arabidopsis thaliana
AT4G11790 5.0kb upstream 5.0kb upstream 5000 false Chr4: 7085353-7090352 Arabidopsis thaliana
AT4G11790 5.0kb downstream 5.0kb downstream 8123 true Chr4: 7090353-7098475 Arabidopsis thaliana
AT4G11790 5.0kb downstream 5.0kb downstream 5000 false Chr4: 7093476-7098475 Arabidopsis thaliana
AT4G11790 10.0kb upstream 10.0kb upstream 13123 true Chr4: 7080353-7093475 Arabidopsis thaliana
AT4G11790 10.0kb upstream 10.0kb upstream 10000 false Chr4: 7080353-7090352 Arabidopsis thaliana
AT4G11790 10.0kb downstream 10.0kb downstream 13123 true Chr4: 7090353-7103475 Arabidopsis thaliana
AT4G11790 10.0kb downstream 10.0kb downstream 10000 false Chr4: 7093476-7103475 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361975 5261 Brassicaceae View MSA
123829340 5264 Brassicales-Malvales View MSA
124338710 5266 SBM View MSA
124240923 5268 Malvidae View MSA
124070591 5270 Rosid View MSA
123739047 5271 Pentapetalae View MSA
122795467 5272 Eudicot View MSA
122048629 5273 Angiosperm View MSA
121344794 5274 Embryophyte View MSA
123425860 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.667        
cufflinks 15.189        
cufflinks 8.735       Low
cufflinks 16.281        
cufflinks 8.661       Low
cufflinks 16.183        

0 Strain