Gene : PPD1 A. thaliana TAIR10
Primary Identifier:  ? AT4G14713 Defline:  (1 of 13) PF09425 - Divergent CCT motif (CCT_2)
Genomic Order:  1341 Name:  ? AT4G14713
Secondary Identifier:  ? PAC:19644943
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0 Pathways

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G14713 0.5kb upstream 0.5kb upstream 3438 true Chr4: 8426710-8430147 Arabidopsis thaliana
AT4G14713 0.5kb upstream 0.5kb upstream 500 false Chr4: 8429648-8430147 Arabidopsis thaliana
AT4G14713 0.5kb downstream 0.5kb downstream 3438 true Chr4: 8426210-8429647 Arabidopsis thaliana
AT4G14713 0.5kb downstream 0.5kb downstream 500 false Chr4: 8426210-8426709 Arabidopsis thaliana
AT4G14713 1.0kb upstream 1.0kb upstream 3938 true Chr4: 8426710-8430647 Arabidopsis thaliana
AT4G14713 1.0kb upstream 1.0kb upstream 1000 false Chr4: 8429648-8430647 Arabidopsis thaliana
AT4G14713 1.0kb downstream 1.0kb downstream 3938 true Chr4: 8425710-8429647 Arabidopsis thaliana
AT4G14713 1.0kb downstream 1.0kb downstream 1000 false Chr4: 8425710-8426709 Arabidopsis thaliana
AT4G14713 2.0kb upstream 2.0kb upstream 4938 true Chr4: 8426710-8431647 Arabidopsis thaliana
AT4G14713 2.0kb upstream 2.0kb upstream 2000 false Chr4: 8429648-8431647 Arabidopsis thaliana
AT4G14713 2.0kb downstream 2.0kb downstream 4938 true Chr4: 8424710-8429647 Arabidopsis thaliana
AT4G14713 2.0kb downstream 2.0kb downstream 2000 false Chr4: 8424710-8426709 Arabidopsis thaliana
AT4G14713 5.0kb upstream 5.0kb upstream 7938 true Chr4: 8426710-8434647 Arabidopsis thaliana
AT4G14713 5.0kb upstream 5.0kb upstream 5000 false Chr4: 8429648-8434647 Arabidopsis thaliana
AT4G14713 5.0kb downstream 5.0kb downstream 7938 true Chr4: 8421710-8429647 Arabidopsis thaliana
AT4G14713 5.0kb downstream 5.0kb downstream 5000 false Chr4: 8421710-8426709 Arabidopsis thaliana
AT4G14713 10.0kb upstream 10.0kb upstream 12938 true Chr4: 8426710-8439647 Arabidopsis thaliana
AT4G14713 10.0kb upstream 10.0kb upstream 10000 false Chr4: 8429648-8439647 Arabidopsis thaliana
AT4G14713 10.0kb downstream 10.0kb downstream 12938 true Chr4: 8416710-8429647 Arabidopsis thaliana
AT4G14713 10.0kb downstream 10.0kb downstream 10000 false Chr4: 8416710-8426709 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122332066 5261 Brassicaceae View MSA
123838239 5264 Brassicales-Malvales View MSA
124346539 5266 SBM View MSA
124245964 5268 Malvidae View MSA
124071929 5270 Rosid View MSA
123743531 5271 Pentapetalae View MSA
122792632 5272 Eudicot View MSA
122044568 5273 Angiosperm View MSA
121310313 5274 Embryophyte View MSA
123347830 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.537        
cufflinks 1.838       High
cufflinks 0.514        
cufflinks 1.756       High
cufflinks 0.505        
cufflinks 1.334        

0 Strain