Gene : AT4G16580 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12320//PTHR12320:SF1 - PROTEIN PHOSPHATASE 2C // PROTEIN PHOSPHATASE PTC7 HOMOLOG Genomic Order:  1575
Name:  ? AT4G16580 Secondary Identifier:  ? PAC:19644637
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G16580 0.5kb upstream 0.5kb upstream 2354 true Chr4: 9340993-9343346 Arabidopsis thaliana
AT4G16580 0.5kb upstream 0.5kb upstream 500 false Chr4: 9342847-9343346 Arabidopsis thaliana
AT4G16580 0.5kb downstream 0.5kb downstream 2354 true Chr4: 9340493-9342846 Arabidopsis thaliana
AT4G16580 0.5kb downstream 0.5kb downstream 500 false Chr4: 9340493-9340992 Arabidopsis thaliana
AT4G16580 1.0kb upstream 1.0kb upstream 2854 true Chr4: 9340993-9343846 Arabidopsis thaliana
AT4G16580 1.0kb upstream 1.0kb upstream 1000 false Chr4: 9342847-9343846 Arabidopsis thaliana
AT4G16580 1.0kb downstream 1.0kb downstream 2854 true Chr4: 9339993-9342846 Arabidopsis thaliana
AT4G16580 1.0kb downstream 1.0kb downstream 1000 false Chr4: 9339993-9340992 Arabidopsis thaliana
AT4G16580 2.0kb upstream 2.0kb upstream 3854 true Chr4: 9340993-9344846 Arabidopsis thaliana
AT4G16580 2.0kb upstream 2.0kb upstream 2000 false Chr4: 9342847-9344846 Arabidopsis thaliana
AT4G16580 2.0kb downstream 2.0kb downstream 3854 true Chr4: 9338993-9342846 Arabidopsis thaliana
AT4G16580 2.0kb downstream 2.0kb downstream 2000 false Chr4: 9338993-9340992 Arabidopsis thaliana
AT4G16580 5.0kb upstream 5.0kb upstream 6854 true Chr4: 9340993-9347846 Arabidopsis thaliana
AT4G16580 5.0kb upstream 5.0kb upstream 5000 false Chr4: 9342847-9347846 Arabidopsis thaliana
AT4G16580 5.0kb downstream 5.0kb downstream 6854 true Chr4: 9335993-9342846 Arabidopsis thaliana
AT4G16580 5.0kb downstream 5.0kb downstream 5000 false Chr4: 9335993-9340992 Arabidopsis thaliana
AT4G16580 10.0kb upstream 10.0kb upstream 11854 true Chr4: 9340993-9352846 Arabidopsis thaliana
AT4G16580 10.0kb upstream 10.0kb upstream 10000 false Chr4: 9342847-9352846 Arabidopsis thaliana
AT4G16580 10.0kb downstream 10.0kb downstream 11854 true Chr4: 9330993-9342846 Arabidopsis thaliana
AT4G16580 10.0kb downstream 10.0kb downstream 10000 false Chr4: 9330993-9340992 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368576 5261 Brassicaceae View MSA
123834774 5264 Brassicales-Malvales View MSA
124340126 5266 SBM View MSA
124241839 5268 Malvidae View MSA
124069007 5270 Rosid View MSA
123743389 5271 Pentapetalae View MSA
122796886 5272 Eudicot View MSA
122043108 5273 Angiosperm View MSA
121351334 5274 Embryophyte View MSA
123428574 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.065       High
cufflinks 14.267        
cufflinks 15.282        
cufflinks 15.589        
cufflinks 13.427       Low
cufflinks 15.631        

0 Strain