Gene : AT4G17270 A. thaliana TAIR10
Defline:  (1 of 4) K08272 - calcium binding protein 39 (CAB39, MO25) Genomic Order:  1650
Name:  ? AT4G17270 Secondary Identifier:  ? PAC:19645743
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G17270 0.5kb upstream 0.5kb upstream 3151 true Chr4: 9675627-9678777 Arabidopsis thaliana
AT4G17270 0.5kb upstream 0.5kb upstream 500 false Chr4: 9675627-9676126 Arabidopsis thaliana
AT4G17270 0.5kb downstream 0.5kb downstream 3151 true Chr4: 9676127-9679277 Arabidopsis thaliana
AT4G17270 0.5kb downstream 0.5kb downstream 500 false Chr4: 9678778-9679277 Arabidopsis thaliana
AT4G17270 1.0kb upstream 1.0kb upstream 3651 true Chr4: 9675127-9678777 Arabidopsis thaliana
AT4G17270 1.0kb upstream 1.0kb upstream 1000 false Chr4: 9675127-9676126 Arabidopsis thaliana
AT4G17270 1.0kb downstream 1.0kb downstream 3651 true Chr4: 9676127-9679777 Arabidopsis thaliana
AT4G17270 1.0kb downstream 1.0kb downstream 1000 false Chr4: 9678778-9679777 Arabidopsis thaliana
AT4G17270 2.0kb upstream 2.0kb upstream 4651 true Chr4: 9674127-9678777 Arabidopsis thaliana
AT4G17270 2.0kb upstream 2.0kb upstream 2000 false Chr4: 9674127-9676126 Arabidopsis thaliana
AT4G17270 2.0kb downstream 2.0kb downstream 4651 true Chr4: 9676127-9680777 Arabidopsis thaliana
AT4G17270 2.0kb downstream 2.0kb downstream 2000 false Chr4: 9678778-9680777 Arabidopsis thaliana
AT4G17270 5.0kb upstream 5.0kb upstream 7651 true Chr4: 9671127-9678777 Arabidopsis thaliana
AT4G17270 5.0kb upstream 5.0kb upstream 5000 false Chr4: 9671127-9676126 Arabidopsis thaliana
AT4G17270 5.0kb downstream 5.0kb downstream 7651 true Chr4: 9676127-9683777 Arabidopsis thaliana
AT4G17270 5.0kb downstream 5.0kb downstream 5000 false Chr4: 9678778-9683777 Arabidopsis thaliana
AT4G17270 10.0kb upstream 10.0kb upstream 12651 true Chr4: 9666127-9678777 Arabidopsis thaliana
AT4G17270 10.0kb upstream 10.0kb upstream 10000 false Chr4: 9666127-9676126 Arabidopsis thaliana
AT4G17270 10.0kb downstream 10.0kb downstream 12651 true Chr4: 9676127-9688777 Arabidopsis thaliana
AT4G17270 10.0kb downstream 10.0kb downstream 10000 false Chr4: 9678778-9688777 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380504 5261 Brassicaceae View MSA
123835895 5264 Brassicales-Malvales View MSA
124347368 5266 SBM View MSA
124249856 5268 Malvidae View MSA
124074299 5270 Rosid View MSA
123751491 5271 Pentapetalae View MSA
122797586 5272 Eudicot View MSA
122044464 5273 Angiosperm View MSA
121347752 5274 Embryophyte View MSA
123425225 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.568        
cufflinks 22.259        
cufflinks 17.646       Low
cufflinks 24.471        
cufflinks 20.306        
cufflinks 24.654        

0 Strain