Gene : UBP16 A. thaliana TAIR10
Primary Identifier:  ? AT4G24560 Defline:  (1 of 1) KOG1865 - Ubiquitin carboxyl-terminal hydrolase
Genomic Order:  2445 Name:  ? AT4G24560
Secondary Identifier:  ? PAC:19647700
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G24560 0.5kb upstream 0.5kb upstream 6230 true Chr4: 12679210-12685439 Arabidopsis thaliana
AT4G24560 0.5kb upstream 0.5kb upstream 500 false Chr4: 12684940-12685439 Arabidopsis thaliana
AT4G24560 0.5kb downstream 0.5kb downstream 6230 true Chr4: 12678710-12684939 Arabidopsis thaliana
AT4G24560 0.5kb downstream 0.5kb downstream 500 false Chr4: 12678710-12679209 Arabidopsis thaliana
AT4G24560 1.0kb upstream 1.0kb upstream 6730 true Chr4: 12679210-12685939 Arabidopsis thaliana
AT4G24560 1.0kb upstream 1.0kb upstream 1000 false Chr4: 12684940-12685939 Arabidopsis thaliana
AT4G24560 1.0kb downstream 1.0kb downstream 6730 true Chr4: 12678210-12684939 Arabidopsis thaliana
AT4G24560 1.0kb downstream 1.0kb downstream 1000 false Chr4: 12678210-12679209 Arabidopsis thaliana
AT4G24560 2.0kb upstream 2.0kb upstream 7730 true Chr4: 12679210-12686939 Arabidopsis thaliana
AT4G24560 2.0kb upstream 2.0kb upstream 2000 false Chr4: 12684940-12686939 Arabidopsis thaliana
AT4G24560 2.0kb downstream 2.0kb downstream 7730 true Chr4: 12677210-12684939 Arabidopsis thaliana
AT4G24560 2.0kb downstream 2.0kb downstream 2000 false Chr4: 12677210-12679209 Arabidopsis thaliana
AT4G24560 5.0kb upstream 5.0kb upstream 10730 true Chr4: 12679210-12689939 Arabidopsis thaliana
AT4G24560 5.0kb upstream 5.0kb upstream 5000 false Chr4: 12684940-12689939 Arabidopsis thaliana
AT4G24560 5.0kb downstream 5.0kb downstream 10730 true Chr4: 12674210-12684939 Arabidopsis thaliana
AT4G24560 5.0kb downstream 5.0kb downstream 5000 false Chr4: 12674210-12679209 Arabidopsis thaliana
AT4G24560 10.0kb upstream 10.0kb upstream 15730 true Chr4: 12679210-12694939 Arabidopsis thaliana
AT4G24560 10.0kb upstream 10.0kb upstream 10000 false Chr4: 12684940-12694939 Arabidopsis thaliana
AT4G24560 10.0kb downstream 10.0kb downstream 15730 true Chr4: 12669210-12684939 Arabidopsis thaliana
AT4G24560 10.0kb downstream 10.0kb downstream 10000 false Chr4: 12669210-12679209 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379621 5261 Brassicaceae View MSA
123833812 5264 Brassicales-Malvales View MSA
124341903 5266 SBM View MSA
124237249 5268 Malvidae View MSA
124074060 5270 Rosid View MSA
123744401 5271 Pentapetalae View MSA
122795716 5272 Eudicot View MSA
122046939 5273 Angiosperm View MSA
121350818 5274 Embryophyte View MSA
123428412 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.614        
cufflinks 10.115        
cufflinks 5.774       Low
cufflinks 10.636       High
cufflinks 6.241       Low
cufflinks 9.688        

0 Strain