Gene : AGL24 A. thaliana TAIR10
Primary Identifier:  ? AT4G24540 Defline:  (1 of 2) PTHR11945:SF179 - MADS-BOX PROTEIN SVP
Genomic Order:  2443 Name:  ? AT4G24540
Secondary Identifier:  ? PAC:19648389
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0 Pathways

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G24540 0.5kb upstream 0.5kb upstream 3608 true Chr4: 12670965-12674572 Arabidopsis thaliana
AT4G24540 0.5kb upstream 0.5kb upstream 500 false Chr4: 12674073-12674572 Arabidopsis thaliana
AT4G24540 0.5kb downstream 0.5kb downstream 3608 true Chr4: 12670465-12674072 Arabidopsis thaliana
AT4G24540 0.5kb downstream 0.5kb downstream 500 false Chr4: 12670465-12670964 Arabidopsis thaliana
AT4G24540 1.0kb upstream 1.0kb upstream 4108 true Chr4: 12670965-12675072 Arabidopsis thaliana
AT4G24540 1.0kb upstream 1.0kb upstream 1000 false Chr4: 12674073-12675072 Arabidopsis thaliana
AT4G24540 1.0kb downstream 1.0kb downstream 4108 true Chr4: 12669965-12674072 Arabidopsis thaliana
AT4G24540 1.0kb downstream 1.0kb downstream 1000 false Chr4: 12669965-12670964 Arabidopsis thaliana
AT4G24540 2.0kb upstream 2.0kb upstream 5108 true Chr4: 12670965-12676072 Arabidopsis thaliana
AT4G24540 2.0kb upstream 2.0kb upstream 2000 false Chr4: 12674073-12676072 Arabidopsis thaliana
AT4G24540 2.0kb downstream 2.0kb downstream 5108 true Chr4: 12668965-12674072 Arabidopsis thaliana
AT4G24540 2.0kb downstream 2.0kb downstream 2000 false Chr4: 12668965-12670964 Arabidopsis thaliana
AT4G24540 5.0kb upstream 5.0kb upstream 8108 true Chr4: 12670965-12679072 Arabidopsis thaliana
AT4G24540 5.0kb upstream 5.0kb upstream 5000 false Chr4: 12674073-12679072 Arabidopsis thaliana
AT4G24540 5.0kb downstream 5.0kb downstream 8108 true Chr4: 12665965-12674072 Arabidopsis thaliana
AT4G24540 5.0kb downstream 5.0kb downstream 5000 false Chr4: 12665965-12670964 Arabidopsis thaliana
AT4G24540 10.0kb upstream 10.0kb upstream 13108 true Chr4: 12670965-12684072 Arabidopsis thaliana
AT4G24540 10.0kb upstream 10.0kb upstream 10000 false Chr4: 12674073-12684072 Arabidopsis thaliana
AT4G24540 10.0kb downstream 10.0kb downstream 13108 true Chr4: 12660965-12674072 Arabidopsis thaliana
AT4G24540 10.0kb downstream 10.0kb downstream 10000 false Chr4: 12660965-12670964 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362813 5261 Brassicaceae View MSA
123834976 5264 Brassicales-Malvales View MSA
124321983 5266 SBM View MSA
124247204 5268 Malvidae View MSA
124071999 5270 Rosid View MSA
123753664 5271 Pentapetalae View MSA
122797561 5272 Eudicot View MSA
122050867 5273 Angiosperm View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.008       High
cufflinks 0.16     Low  
cufflinks 5.178        
cufflinks 0.312     Low  
cufflinks 4.161        
cufflinks 0.142     Low Low

0 Strain