Gene : AT4G25890 A. thaliana TAIR10
Defline:  (1 of 6) K02942 - large subunit ribosomal protein LP1 (RP-LP1, RPLP1) Genomic Order:  2590
Name:  ? AT4G25890 Secondary Identifier:  ? PAC:19648269
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G25890 0.5kb upstream 0.5kb upstream 1512 true Chr4: 13159484-13160995 Arabidopsis thaliana
AT4G25890 0.5kb upstream 0.5kb upstream 500 false Chr4: 13160496-13160995 Arabidopsis thaliana
AT4G25890 0.5kb downstream 0.5kb downstream 1512 true Chr4: 13158984-13160495 Arabidopsis thaliana
AT4G25890 0.5kb downstream 0.5kb downstream 500 false Chr4: 13158984-13159483 Arabidopsis thaliana
AT4G25890 1.0kb upstream 1.0kb upstream 2012 true Chr4: 13159484-13161495 Arabidopsis thaliana
AT4G25890 1.0kb upstream 1.0kb upstream 1000 false Chr4: 13160496-13161495 Arabidopsis thaliana
AT4G25890 1.0kb downstream 1.0kb downstream 2012 true Chr4: 13158484-13160495 Arabidopsis thaliana
AT4G25890 1.0kb downstream 1.0kb downstream 1000 false Chr4: 13158484-13159483 Arabidopsis thaliana
AT4G25890 2.0kb upstream 2.0kb upstream 3012 true Chr4: 13159484-13162495 Arabidopsis thaliana
AT4G25890 2.0kb upstream 2.0kb upstream 2000 false Chr4: 13160496-13162495 Arabidopsis thaliana
AT4G25890 2.0kb downstream 2.0kb downstream 3012 true Chr4: 13157484-13160495 Arabidopsis thaliana
AT4G25890 2.0kb downstream 2.0kb downstream 2000 false Chr4: 13157484-13159483 Arabidopsis thaliana
AT4G25890 5.0kb upstream 5.0kb upstream 6012 true Chr4: 13159484-13165495 Arabidopsis thaliana
AT4G25890 5.0kb upstream 5.0kb upstream 5000 false Chr4: 13160496-13165495 Arabidopsis thaliana
AT4G25890 5.0kb downstream 5.0kb downstream 6012 true Chr4: 13154484-13160495 Arabidopsis thaliana
AT4G25890 5.0kb downstream 5.0kb downstream 5000 false Chr4: 13154484-13159483 Arabidopsis thaliana
AT4G25890 10.0kb upstream 10.0kb upstream 11012 true Chr4: 13159484-13170495 Arabidopsis thaliana
AT4G25890 10.0kb upstream 10.0kb upstream 10000 false Chr4: 13160496-13170495 Arabidopsis thaliana
AT4G25890 10.0kb downstream 10.0kb downstream 11012 true Chr4: 13149484-13160495 Arabidopsis thaliana
AT4G25890 10.0kb downstream 10.0kb downstream 10000 false Chr4: 13149484-13159483 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380092 5261 Brassicaceae View MSA
123827526 5264 Brassicales-Malvales View MSA
124343426 5266 SBM View MSA
124243388 5268 Malvidae View MSA
124060612 5270 Rosid View MSA
123738498 5271 Pentapetalae View MSA
122786721 5272 Eudicot View MSA
122041994 5273 Angiosperm View MSA
121347271 5274 Embryophyte View MSA
123424793 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.511        
cufflinks 34.278     High  
cufflinks 25.71        
cufflinks 31.539     High  
cufflinks 16.857       Low
cufflinks 43.004     High High

0 Strain