Gene : RMA2 A. thaliana TAIR10
Primary Identifier:  ? AT4G28270 Defline:  (1 of 6) K10666 - E3 ubiquitin-protein ligase RNF5 (RNF5)
Genomic Order:  2847 Name:  ? AT4G28270
Secondary Identifier:  ? PAC:19644052
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G28270 0.5kb upstream 0.5kb upstream 1981 true Chr4: 14007539-14009519 Arabidopsis thaliana
AT4G28270 0.5kb upstream 0.5kb upstream 500 false Chr4: 14009020-14009519 Arabidopsis thaliana
AT4G28270 0.5kb downstream 0.5kb downstream 1981 true Chr4: 14007039-14009019 Arabidopsis thaliana
AT4G28270 0.5kb downstream 0.5kb downstream 500 false Chr4: 14007039-14007538 Arabidopsis thaliana
AT4G28270 1.0kb upstream 1.0kb upstream 2481 true Chr4: 14007539-14010019 Arabidopsis thaliana
AT4G28270 1.0kb upstream 1.0kb upstream 1000 false Chr4: 14009020-14010019 Arabidopsis thaliana
AT4G28270 1.0kb downstream 1.0kb downstream 2481 true Chr4: 14006539-14009019 Arabidopsis thaliana
AT4G28270 1.0kb downstream 1.0kb downstream 1000 false Chr4: 14006539-14007538 Arabidopsis thaliana
AT4G28270 2.0kb upstream 2.0kb upstream 3481 true Chr4: 14007539-14011019 Arabidopsis thaliana
AT4G28270 2.0kb upstream 2.0kb upstream 2000 false Chr4: 14009020-14011019 Arabidopsis thaliana
AT4G28270 2.0kb downstream 2.0kb downstream 3481 true Chr4: 14005539-14009019 Arabidopsis thaliana
AT4G28270 2.0kb downstream 2.0kb downstream 2000 false Chr4: 14005539-14007538 Arabidopsis thaliana
AT4G28270 5.0kb upstream 5.0kb upstream 6481 true Chr4: 14007539-14014019 Arabidopsis thaliana
AT4G28270 5.0kb upstream 5.0kb upstream 5000 false Chr4: 14009020-14014019 Arabidopsis thaliana
AT4G28270 5.0kb downstream 5.0kb downstream 6481 true Chr4: 14002539-14009019 Arabidopsis thaliana
AT4G28270 5.0kb downstream 5.0kb downstream 5000 false Chr4: 14002539-14007538 Arabidopsis thaliana
AT4G28270 10.0kb upstream 10.0kb upstream 11481 true Chr4: 14007539-14019019 Arabidopsis thaliana
AT4G28270 10.0kb upstream 10.0kb upstream 10000 false Chr4: 14009020-14019019 Arabidopsis thaliana
AT4G28270 10.0kb downstream 10.0kb downstream 11481 true Chr4: 13997539-14009019 Arabidopsis thaliana
AT4G28270 10.0kb downstream 10.0kb downstream 10000 false Chr4: 13997539-14007538 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362579 5261 Brassicaceae View MSA
123798387 5264 Brassicales-Malvales View MSA
124296028 5266 SBM View MSA
124250976 5268 Malvidae View MSA
123952553 5270 Rosid View MSA
123750753 5271 Pentapetalae View MSA
122796389 5272 Eudicot View MSA
122051949 5273 Angiosperm View MSA
121312825 5274 Embryophyte View MSA
123428794 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 26.916       High
cufflinks 2.776        
cufflinks 17.994        
cufflinks 3.575        
cufflinks 23.189        
cufflinks 2.953        

0 Strain