Gene : UBC9 A. thaliana TAIR10
Primary Identifier:  ? AT4G27960 Defline:  (1 of 12) K06689 - ubiquitin-conjugating enzyme E2 D/E (UBE2D_E, UBC4, UBC5)
Genomic Order:  2811 Name:  ? AT4G27960
Secondary Identifier:  ? PAC:19646696
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G27960 0.5kb upstream 0.5kb upstream 2101 true Chr4: 13915820-13917920 Arabidopsis thaliana
AT4G27960 0.5kb upstream 0.5kb upstream 500 false Chr4: 13917421-13917920 Arabidopsis thaliana
AT4G27960 0.5kb downstream 0.5kb downstream 2101 true Chr4: 13915320-13917420 Arabidopsis thaliana
AT4G27960 0.5kb downstream 0.5kb downstream 500 false Chr4: 13915320-13915819 Arabidopsis thaliana
AT4G27960 1.0kb upstream 1.0kb upstream 2601 true Chr4: 13915820-13918420 Arabidopsis thaliana
AT4G27960 1.0kb upstream 1.0kb upstream 1000 false Chr4: 13917421-13918420 Arabidopsis thaliana
AT4G27960 1.0kb downstream 1.0kb downstream 2601 true Chr4: 13914820-13917420 Arabidopsis thaliana
AT4G27960 1.0kb downstream 1.0kb downstream 1000 false Chr4: 13914820-13915819 Arabidopsis thaliana
AT4G27960 2.0kb upstream 2.0kb upstream 3601 true Chr4: 13915820-13919420 Arabidopsis thaliana
AT4G27960 2.0kb upstream 2.0kb upstream 2000 false Chr4: 13917421-13919420 Arabidopsis thaliana
AT4G27960 2.0kb downstream 2.0kb downstream 3601 true Chr4: 13913820-13917420 Arabidopsis thaliana
AT4G27960 2.0kb downstream 2.0kb downstream 2000 false Chr4: 13913820-13915819 Arabidopsis thaliana
AT4G27960 5.0kb upstream 5.0kb upstream 6601 true Chr4: 13915820-13922420 Arabidopsis thaliana
AT4G27960 5.0kb upstream 5.0kb upstream 5000 false Chr4: 13917421-13922420 Arabidopsis thaliana
AT4G27960 5.0kb downstream 5.0kb downstream 6601 true Chr4: 13910820-13917420 Arabidopsis thaliana
AT4G27960 5.0kb downstream 5.0kb downstream 5000 false Chr4: 13910820-13915819 Arabidopsis thaliana
AT4G27960 10.0kb upstream 10.0kb upstream 11601 true Chr4: 13915820-13927420 Arabidopsis thaliana
AT4G27960 10.0kb upstream 10.0kb upstream 10000 false Chr4: 13917421-13927420 Arabidopsis thaliana
AT4G27960 10.0kb downstream 10.0kb downstream 11601 true Chr4: 13905820-13917420 Arabidopsis thaliana
AT4G27960 10.0kb downstream 10.0kb downstream 10000 false Chr4: 13905820-13915819 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122330617 5261 Brassicaceae Singleton cluster - no MSA
123841713 5264 Brassicales-Malvales View MSA
124350709 5266 SBM View MSA
124253903 5268 Malvidae View MSA
124072408 5270 Rosid View MSA
123751143 5271 Pentapetalae View MSA
122796795 5272 Eudicot View MSA
122049643 5273 Angiosperm View MSA
121351650 5274 Embryophyte View MSA
123428086 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 37.35     High  
cufflinks 66.82     High High
cufflinks 34.202     High  
cufflinks 57.88     High  
cufflinks 33.675     High Low
cufflinks 61.748     High  

0 Strain