Gene : AT4G27880 A. thaliana TAIR10
Defline:  (1 of 3) PTHR10315//PTHR10315:SF34 - SEVEN IN ABSENTIA HOMOLOG // E3 UBIQUITIN-PROTEIN LIGASE SINAT3-RELATED Genomic Order:  2803
Name:  ? AT4G27880 Secondary Identifier:  ? PAC:19648492
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G27880 0.5kb upstream 0.5kb upstream 2330 true Chr4: 13882723-13885052 Arabidopsis thaliana
AT4G27880 0.5kb upstream 0.5kb upstream 500 false Chr4: 13882723-13883222 Arabidopsis thaliana
AT4G27880 0.5kb downstream 0.5kb downstream 2330 true Chr4: 13883223-13885552 Arabidopsis thaliana
AT4G27880 0.5kb downstream 0.5kb downstream 500 false Chr4: 13885053-13885552 Arabidopsis thaliana
AT4G27880 1.0kb upstream 1.0kb upstream 2830 true Chr4: 13882223-13885052 Arabidopsis thaliana
AT4G27880 1.0kb upstream 1.0kb upstream 1000 false Chr4: 13882223-13883222 Arabidopsis thaliana
AT4G27880 1.0kb downstream 1.0kb downstream 2830 true Chr4: 13883223-13886052 Arabidopsis thaliana
AT4G27880 1.0kb downstream 1.0kb downstream 1000 false Chr4: 13885053-13886052 Arabidopsis thaliana
AT4G27880 2.0kb upstream 2.0kb upstream 3830 true Chr4: 13881223-13885052 Arabidopsis thaliana
AT4G27880 2.0kb upstream 2.0kb upstream 2000 false Chr4: 13881223-13883222 Arabidopsis thaliana
AT4G27880 2.0kb downstream 2.0kb downstream 3830 true Chr4: 13883223-13887052 Arabidopsis thaliana
AT4G27880 2.0kb downstream 2.0kb downstream 2000 false Chr4: 13885053-13887052 Arabidopsis thaliana
AT4G27880 5.0kb upstream 5.0kb upstream 6830 true Chr4: 13878223-13885052 Arabidopsis thaliana
AT4G27880 5.0kb upstream 5.0kb upstream 5000 false Chr4: 13878223-13883222 Arabidopsis thaliana
AT4G27880 5.0kb downstream 5.0kb downstream 6830 true Chr4: 13883223-13890052 Arabidopsis thaliana
AT4G27880 5.0kb downstream 5.0kb downstream 5000 false Chr4: 13885053-13890052 Arabidopsis thaliana
AT4G27880 10.0kb upstream 10.0kb upstream 11830 true Chr4: 13873223-13885052 Arabidopsis thaliana
AT4G27880 10.0kb upstream 10.0kb upstream 10000 false Chr4: 13873223-13883222 Arabidopsis thaliana
AT4G27880 10.0kb downstream 10.0kb downstream 11830 true Chr4: 13883223-13895052 Arabidopsis thaliana
AT4G27880 10.0kb downstream 10.0kb downstream 10000 false Chr4: 13885053-13895052 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369090 5261 Brassicaceae View MSA
123832922 5264 Brassicales-Malvales View MSA
124341271 5266 SBM View MSA
124251160 5268 Malvidae View MSA
124072834 5270 Rosid View MSA
123746623 5271 Pentapetalae View MSA
122796827 5272 Eudicot View MSA
122050638 5273 Angiosperm View MSA
121350928 5274 Embryophyte View MSA
123381939 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.54       High
cufflinks 13.524        
cufflinks 11.034       Low
cufflinks 14.036        
cufflinks 11.377       Low
cufflinks 14.574        

0 Strain