Gene : OPT6 A. thaliana TAIR10
Primary Identifier:  ? AT4G27730 Defline:  (1 of 3) PTHR22601:SF22 - OLIGOPEPTIDE TRANSPORTER 6-RELATED
Genomic Order:  2788 Name:  ? AT4G27730
Secondary Identifier:  ? PAC:19645621
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G27730 0.5kb upstream 0.5kb upstream 3272 true Chr4: 13833807-13837078 Arabidopsis thaliana
AT4G27730 0.5kb upstream 0.5kb upstream 500 false Chr4: 13836579-13837078 Arabidopsis thaliana
AT4G27730 0.5kb downstream 0.5kb downstream 3272 true Chr4: 13833307-13836578 Arabidopsis thaliana
AT4G27730 0.5kb downstream 0.5kb downstream 500 false Chr4: 13833307-13833806 Arabidopsis thaliana
AT4G27730 1.0kb upstream 1.0kb upstream 3772 true Chr4: 13833807-13837578 Arabidopsis thaliana
AT4G27730 1.0kb upstream 1.0kb upstream 1000 false Chr4: 13836579-13837578 Arabidopsis thaliana
AT4G27730 1.0kb downstream 1.0kb downstream 3772 true Chr4: 13832807-13836578 Arabidopsis thaliana
AT4G27730 1.0kb downstream 1.0kb downstream 1000 false Chr4: 13832807-13833806 Arabidopsis thaliana
AT4G27730 2.0kb upstream 2.0kb upstream 4772 true Chr4: 13833807-13838578 Arabidopsis thaliana
AT4G27730 2.0kb upstream 2.0kb upstream 2000 false Chr4: 13836579-13838578 Arabidopsis thaliana
AT4G27730 2.0kb downstream 2.0kb downstream 4772 true Chr4: 13831807-13836578 Arabidopsis thaliana
AT4G27730 2.0kb downstream 2.0kb downstream 2000 false Chr4: 13831807-13833806 Arabidopsis thaliana
AT4G27730 5.0kb upstream 5.0kb upstream 7772 true Chr4: 13833807-13841578 Arabidopsis thaliana
AT4G27730 5.0kb upstream 5.0kb upstream 5000 false Chr4: 13836579-13841578 Arabidopsis thaliana
AT4G27730 5.0kb downstream 5.0kb downstream 7772 true Chr4: 13828807-13836578 Arabidopsis thaliana
AT4G27730 5.0kb downstream 5.0kb downstream 5000 false Chr4: 13828807-13833806 Arabidopsis thaliana
AT4G27730 10.0kb upstream 10.0kb upstream 12772 true Chr4: 13833807-13846578 Arabidopsis thaliana
AT4G27730 10.0kb upstream 10.0kb upstream 10000 false Chr4: 13836579-13846578 Arabidopsis thaliana
AT4G27730 10.0kb downstream 10.0kb downstream 12772 true Chr4: 13823807-13836578 Arabidopsis thaliana
AT4G27730 10.0kb downstream 10.0kb downstream 10000 false Chr4: 13823807-13833806 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370295 5261 Brassicaceae View MSA
123835002 5264 Brassicales-Malvales View MSA
124336629 5266 SBM View MSA
124237972 5268 Malvidae View MSA
124050403 5270 Rosid View MSA
123750200 5271 Pentapetalae View MSA
122797569 5272 Eudicot View MSA
122049856 5273 Angiosperm View MSA
121351141 5274 Embryophyte View MSA
123382023 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.161        
cufflinks 2.708        
cufflinks 1.127       Low
cufflinks 3.243        
cufflinks 1.139       Low
cufflinks 5.687       High

0 Strain