Gene : RMA3 A. thaliana TAIR10
Primary Identifier:  ? AT4G27470 Defline:  (1 of 1) PTHR12313//PTHR12313:SF2 - RNF5 // E3 UBIQUITIN-PROTEIN LIGASE RMA3
Genomic Order:  2757 Name:  ? AT4G27470
Secondary Identifier:  ? PAC:19644667
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G27470 0.5kb upstream 0.5kb upstream 2020 true Chr4: 13734499-13736518 Arabidopsis thaliana
AT4G27470 0.5kb upstream 0.5kb upstream 500 false Chr4: 13734499-13734998 Arabidopsis thaliana
AT4G27470 0.5kb downstream 0.5kb downstream 2020 true Chr4: 13734999-13737018 Arabidopsis thaliana
AT4G27470 0.5kb downstream 0.5kb downstream 500 false Chr4: 13736519-13737018 Arabidopsis thaliana
AT4G27470 1.0kb upstream 1.0kb upstream 2520 true Chr4: 13733999-13736518 Arabidopsis thaliana
AT4G27470 1.0kb upstream 1.0kb upstream 1000 false Chr4: 13733999-13734998 Arabidopsis thaliana
AT4G27470 1.0kb downstream 1.0kb downstream 2520 true Chr4: 13734999-13737518 Arabidopsis thaliana
AT4G27470 1.0kb downstream 1.0kb downstream 1000 false Chr4: 13736519-13737518 Arabidopsis thaliana
AT4G27470 2.0kb upstream 2.0kb upstream 3520 true Chr4: 13732999-13736518 Arabidopsis thaliana
AT4G27470 2.0kb upstream 2.0kb upstream 2000 false Chr4: 13732999-13734998 Arabidopsis thaliana
AT4G27470 2.0kb downstream 2.0kb downstream 3520 true Chr4: 13734999-13738518 Arabidopsis thaliana
AT4G27470 2.0kb downstream 2.0kb downstream 2000 false Chr4: 13736519-13738518 Arabidopsis thaliana
AT4G27470 5.0kb upstream 5.0kb upstream 6520 true Chr4: 13729999-13736518 Arabidopsis thaliana
AT4G27470 5.0kb upstream 5.0kb upstream 5000 false Chr4: 13729999-13734998 Arabidopsis thaliana
AT4G27470 5.0kb downstream 5.0kb downstream 6520 true Chr4: 13734999-13741518 Arabidopsis thaliana
AT4G27470 5.0kb downstream 5.0kb downstream 5000 false Chr4: 13736519-13741518 Arabidopsis thaliana
AT4G27470 10.0kb upstream 10.0kb upstream 11520 true Chr4: 13724999-13736518 Arabidopsis thaliana
AT4G27470 10.0kb upstream 10.0kb upstream 10000 false Chr4: 13724999-13734998 Arabidopsis thaliana
AT4G27470 10.0kb downstream 10.0kb downstream 11520 true Chr4: 13734999-13746518 Arabidopsis thaliana
AT4G27470 10.0kb downstream 10.0kb downstream 10000 false Chr4: 13736519-13746518 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374993 5261 Brassicaceae View MSA
123840591 5264 Brassicales-Malvales View MSA
124340253 5266 SBM View MSA
124252908 5268 Malvidae View MSA
124070721 5270 Rosid View MSA
123750753 5271 Pentapetalae View MSA
122796389 5272 Eudicot View MSA
122051949 5273 Angiosperm View MSA
121312825 5274 Embryophyte View MSA
123428794 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.853       High
cufflinks 8.46        
cufflinks 6.839       Low
cufflinks 10.186        
cufflinks 10.579        
cufflinks 9.901        

0 Strain