Gene : AT4G29920 A. thaliana TAIR10
Defline:  (1 of 2) PTHR11638//PTHR11638:SF123 - ATP-DEPENDENT CLP PROTEASE // CLP AMINO TERMINAL DOMAIN-CONTAINING PROTEIN Genomic Order:  3030
Name:  ? AT4G29920 Secondary Identifier:  ? PAC:19648950
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G29920 0.5kb upstream 0.5kb upstream 3733 true Chr4: 14632653-14636385 Arabidopsis thaliana
AT4G29920 0.5kb upstream 0.5kb upstream 500 false Chr4: 14635886-14636385 Arabidopsis thaliana
AT4G29920 0.5kb downstream 0.5kb downstream 3733 true Chr4: 14632153-14635885 Arabidopsis thaliana
AT4G29920 0.5kb downstream 0.5kb downstream 500 false Chr4: 14632153-14632652 Arabidopsis thaliana
AT4G29920 1.0kb upstream 1.0kb upstream 4233 true Chr4: 14632653-14636885 Arabidopsis thaliana
AT4G29920 1.0kb upstream 1.0kb upstream 1000 false Chr4: 14635886-14636885 Arabidopsis thaliana
AT4G29920 1.0kb downstream 1.0kb downstream 4233 true Chr4: 14631653-14635885 Arabidopsis thaliana
AT4G29920 1.0kb downstream 1.0kb downstream 1000 false Chr4: 14631653-14632652 Arabidopsis thaliana
AT4G29920 2.0kb upstream 2.0kb upstream 5233 true Chr4: 14632653-14637885 Arabidopsis thaliana
AT4G29920 2.0kb upstream 2.0kb upstream 2000 false Chr4: 14635886-14637885 Arabidopsis thaliana
AT4G29920 2.0kb downstream 2.0kb downstream 5233 true Chr4: 14630653-14635885 Arabidopsis thaliana
AT4G29920 2.0kb downstream 2.0kb downstream 2000 false Chr4: 14630653-14632652 Arabidopsis thaliana
AT4G29920 5.0kb upstream 5.0kb upstream 8233 true Chr4: 14632653-14640885 Arabidopsis thaliana
AT4G29920 5.0kb upstream 5.0kb upstream 5000 false Chr4: 14635886-14640885 Arabidopsis thaliana
AT4G29920 5.0kb downstream 5.0kb downstream 8233 true Chr4: 14627653-14635885 Arabidopsis thaliana
AT4G29920 5.0kb downstream 5.0kb downstream 5000 false Chr4: 14627653-14632652 Arabidopsis thaliana
AT4G29920 10.0kb upstream 10.0kb upstream 13233 true Chr4: 14632653-14645885 Arabidopsis thaliana
AT4G29920 10.0kb upstream 10.0kb upstream 10000 false Chr4: 14635886-14645885 Arabidopsis thaliana
AT4G29920 10.0kb downstream 10.0kb downstream 13233 true Chr4: 14622653-14635885 Arabidopsis thaliana
AT4G29920 10.0kb downstream 10.0kb downstream 10000 false Chr4: 14622653-14632652 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363347 5261 Brassicaceae View MSA
123830918 5264 Brassicales-Malvales View MSA
124348492 5266 SBM View MSA
124244949 5268 Malvidae View MSA
124066175 5270 Rosid View MSA
123751294 5271 Pentapetalae View MSA
122791347 5272 Eudicot View MSA
122049419 5273 Angiosperm View MSA
121351273 5274 Embryophyte View MSA
123382090 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.83        
cufflinks 6.164        
cufflinks 0.817        
cufflinks 8.401       High
cufflinks 0.47       Low
cufflinks 5.41        

0 Strain