Gene : CNGC17 A. thaliana TAIR10
Primary Identifier:  ? AT4G30360 Defline:  (1 of 2) PTHR10217:SF544 - CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED
Genomic Order:  3078 Name:  ? AT4G30360
Secondary Identifier:  ? PAC:19647302
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G30360 0.5kb upstream 0.5kb upstream 3693 true Chr4: 14854811-14858503 Arabidopsis thaliana
AT4G30360 0.5kb upstream 0.5kb upstream 500 false Chr4: 14858004-14858503 Arabidopsis thaliana
AT4G30360 0.5kb downstream 0.5kb downstream 3693 true Chr4: 14854311-14858003 Arabidopsis thaliana
AT4G30360 0.5kb downstream 0.5kb downstream 500 false Chr4: 14854311-14854810 Arabidopsis thaliana
AT4G30360 1.0kb upstream 1.0kb upstream 4193 true Chr4: 14854811-14859003 Arabidopsis thaliana
AT4G30360 1.0kb upstream 1.0kb upstream 1000 false Chr4: 14858004-14859003 Arabidopsis thaliana
AT4G30360 1.0kb downstream 1.0kb downstream 4193 true Chr4: 14853811-14858003 Arabidopsis thaliana
AT4G30360 1.0kb downstream 1.0kb downstream 1000 false Chr4: 14853811-14854810 Arabidopsis thaliana
AT4G30360 2.0kb upstream 2.0kb upstream 5193 true Chr4: 14854811-14860003 Arabidopsis thaliana
AT4G30360 2.0kb upstream 2.0kb upstream 2000 false Chr4: 14858004-14860003 Arabidopsis thaliana
AT4G30360 2.0kb downstream 2.0kb downstream 5193 true Chr4: 14852811-14858003 Arabidopsis thaliana
AT4G30360 2.0kb downstream 2.0kb downstream 2000 false Chr4: 14852811-14854810 Arabidopsis thaliana
AT4G30360 5.0kb upstream 5.0kb upstream 8193 true Chr4: 14854811-14863003 Arabidopsis thaliana
AT4G30360 5.0kb upstream 5.0kb upstream 5000 false Chr4: 14858004-14863003 Arabidopsis thaliana
AT4G30360 5.0kb downstream 5.0kb downstream 8193 true Chr4: 14849811-14858003 Arabidopsis thaliana
AT4G30360 5.0kb downstream 5.0kb downstream 5000 false Chr4: 14849811-14854810 Arabidopsis thaliana
AT4G30360 10.0kb upstream 10.0kb upstream 13193 true Chr4: 14854811-14868003 Arabidopsis thaliana
AT4G30360 10.0kb upstream 10.0kb upstream 10000 false Chr4: 14858004-14868003 Arabidopsis thaliana
AT4G30360 10.0kb downstream 10.0kb downstream 13193 true Chr4: 14844811-14858003 Arabidopsis thaliana
AT4G30360 10.0kb downstream 10.0kb downstream 10000 false Chr4: 14844811-14854810 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041490 5273 Angiosperm View MSA
122373142 5261 Brassicaceae View MSA
123828501 5264 Brassicales-Malvales View MSA
124340672 5266 SBM View MSA
124240070 5268 Malvidae View MSA
124073403 5270 Rosid View MSA
123747107 5271 Pentapetalae View MSA
122792156 5272 Eudicot View MSA
121351754 5274 Embryophyte View MSA
123428762 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.178        
cufflinks 13.143       High
cufflinks 5.79       Low
cufflinks 12.743       High
cufflinks 7.081        
cufflinks 10.742        

0 Strain