Gene : SQS1 A. thaliana TAIR10
Primary Identifier:  ? AT4G34640 Defline:  (1 of 2) 2.5.1.21 - Squalene synthase / Squalene synthetase
Genomic Order:  3549 Name:  ? AT4G34640
Secondary Identifier:  ? PAC:19643823
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Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-2541 Arabidopsis thaliana pathologic  
Athaliana PWY-5670 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G34640 0.5kb upstream 0.5kb upstream 4145 true Chr4: 16537782-16541926 Arabidopsis thaliana
AT4G34640 0.5kb upstream 0.5kb upstream 500 false Chr4: 16537782-16538281 Arabidopsis thaliana
AT4G34640 0.5kb downstream 0.5kb downstream 4145 true Chr4: 16538282-16542426 Arabidopsis thaliana
AT4G34640 0.5kb downstream 0.5kb downstream 500 false Chr4: 16541927-16542426 Arabidopsis thaliana
AT4G34640 1.0kb upstream 1.0kb upstream 4645 true Chr4: 16537282-16541926 Arabidopsis thaliana
AT4G34640 1.0kb upstream 1.0kb upstream 1000 false Chr4: 16537282-16538281 Arabidopsis thaliana
AT4G34640 1.0kb downstream 1.0kb downstream 4645 true Chr4: 16538282-16542926 Arabidopsis thaliana
AT4G34640 1.0kb downstream 1.0kb downstream 1000 false Chr4: 16541927-16542926 Arabidopsis thaliana
AT4G34640 2.0kb upstream 2.0kb upstream 5645 true Chr4: 16536282-16541926 Arabidopsis thaliana
AT4G34640 2.0kb upstream 2.0kb upstream 2000 false Chr4: 16536282-16538281 Arabidopsis thaliana
AT4G34640 2.0kb downstream 2.0kb downstream 5645 true Chr4: 16538282-16543926 Arabidopsis thaliana
AT4G34640 2.0kb downstream 2.0kb downstream 2000 false Chr4: 16541927-16543926 Arabidopsis thaliana
AT4G34640 5.0kb upstream 5.0kb upstream 8645 true Chr4: 16533282-16541926 Arabidopsis thaliana
AT4G34640 5.0kb upstream 5.0kb upstream 5000 false Chr4: 16533282-16538281 Arabidopsis thaliana
AT4G34640 5.0kb downstream 5.0kb downstream 8645 true Chr4: 16538282-16546926 Arabidopsis thaliana
AT4G34640 5.0kb downstream 5.0kb downstream 5000 false Chr4: 16541927-16546926 Arabidopsis thaliana
AT4G34640 10.0kb upstream 10.0kb upstream 13645 true Chr4: 16528282-16541926 Arabidopsis thaliana
AT4G34640 10.0kb upstream 10.0kb upstream 10000 false Chr4: 16528282-16538281 Arabidopsis thaliana
AT4G34640 10.0kb downstream 10.0kb downstream 13645 true Chr4: 16538282-16551926 Arabidopsis thaliana
AT4G34640 10.0kb downstream 10.0kb downstream 10000 false Chr4: 16541927-16551926 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363626 5261 Brassicaceae View MSA
123827932 5264 Brassicales-Malvales View MSA
124340465 5266 SBM View MSA
124243687 5268 Malvidae View MSA
124065005 5270 Rosid View MSA
123747848 5271 Pentapetalae View MSA
122787825 5272 Eudicot View MSA
122042609 5273 Angiosperm View MSA
121351426 5274 Embryophyte View MSA
123424778 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.067        
cufflinks 23.34        
cufflinks 14.311       Low
cufflinks 27.266       High
cufflinks 16.035        
cufflinks 26.729       High

0 Strain