Gene : VHA-C3 A. thaliana TAIR10
Primary Identifier:  ? AT4G38920 Defline:  (1 of 5) K02155 - V-type H+-transporting ATPase 16kDa proteolipid subunit (ATPeV0C, ATP6L)
Genomic Order:  3999 Name:  ? AT4G38920
Secondary Identifier:  ? PAC:19646233
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0 Pathways

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G38920 0.5kb upstream 0.5kb upstream 2557 true Chr4: 18146711-18149267 Arabidopsis thaliana
AT4G38920 0.5kb upstream 0.5kb upstream 500 false Chr4: 18146711-18147210 Arabidopsis thaliana
AT4G38920 0.5kb downstream 0.5kb downstream 2557 true Chr4: 18147211-18149767 Arabidopsis thaliana
AT4G38920 0.5kb downstream 0.5kb downstream 500 false Chr4: 18149268-18149767 Arabidopsis thaliana
AT4G38920 1.0kb upstream 1.0kb upstream 3057 true Chr4: 18146211-18149267 Arabidopsis thaliana
AT4G38920 1.0kb upstream 1.0kb upstream 1000 false Chr4: 18146211-18147210 Arabidopsis thaliana
AT4G38920 1.0kb downstream 1.0kb downstream 3057 true Chr4: 18147211-18150267 Arabidopsis thaliana
AT4G38920 1.0kb downstream 1.0kb downstream 1000 false Chr4: 18149268-18150267 Arabidopsis thaliana
AT4G38920 2.0kb upstream 2.0kb upstream 4057 true Chr4: 18145211-18149267 Arabidopsis thaliana
AT4G38920 2.0kb upstream 2.0kb upstream 2000 false Chr4: 18145211-18147210 Arabidopsis thaliana
AT4G38920 2.0kb downstream 2.0kb downstream 4057 true Chr4: 18147211-18151267 Arabidopsis thaliana
AT4G38920 2.0kb downstream 2.0kb downstream 2000 false Chr4: 18149268-18151267 Arabidopsis thaliana
AT4G38920 5.0kb upstream 5.0kb upstream 7057 true Chr4: 18142211-18149267 Arabidopsis thaliana
AT4G38920 5.0kb upstream 5.0kb upstream 5000 false Chr4: 18142211-18147210 Arabidopsis thaliana
AT4G38920 5.0kb downstream 5.0kb downstream 7057 true Chr4: 18147211-18154267 Arabidopsis thaliana
AT4G38920 5.0kb downstream 5.0kb downstream 5000 false Chr4: 18149268-18154267 Arabidopsis thaliana
AT4G38920 10.0kb upstream 10.0kb upstream 12057 true Chr4: 18137211-18149267 Arabidopsis thaliana
AT4G38920 10.0kb upstream 10.0kb upstream 10000 false Chr4: 18137211-18147210 Arabidopsis thaliana
AT4G38920 10.0kb downstream 10.0kb downstream 12057 true Chr4: 18147211-18159267 Arabidopsis thaliana
AT4G38920 10.0kb downstream 10.0kb downstream 10000 false Chr4: 18149268-18159267 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379699 5261 Brassicaceae View MSA
123840555 5264 Brassicales-Malvales View MSA
124343812 5266 SBM View MSA
124250754 5268 Malvidae View MSA
124071141 5270 Rosid View MSA
123751721 5271 Pentapetalae View MSA
122796043 5272 Eudicot View MSA
122048360 5273 Angiosperm View MSA
121348011 5274 Embryophyte View MSA
123424193 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 80.15     High  
cufflinks 93.938     High  
cufflinks 70.086     High Low
cufflinks 96.491     High  
cufflinks 68.973     High Low
cufflinks 110.667     High High

0 Strain