Gene : BPC5 A. thaliana TAIR10
Primary Identifier:  ? AT4G38910 Defline:  (1 of 2) PTHR31421//PTHR31421:SF3 - FAMILY NOT NAMED // PROTEIN BASIC PENTACYSTEINE4-RELATED
Genomic Order:  3998 Name:  ? AT4G38910
Secondary Identifier:  ? PAC:19646205
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0 Pathways

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G38910 0.5kb upstream 0.5kb upstream 2190 true Chr4: 18145239-18147428 Arabidopsis thaliana
AT4G38910 0.5kb upstream 0.5kb upstream 500 false Chr4: 18146929-18147428 Arabidopsis thaliana
AT4G38910 0.5kb downstream 0.5kb downstream 2190 true Chr4: 18144739-18146928 Arabidopsis thaliana
AT4G38910 0.5kb downstream 0.5kb downstream 500 false Chr4: 18144739-18145238 Arabidopsis thaliana
AT4G38910 1.0kb upstream 1.0kb upstream 2690 true Chr4: 18145239-18147928 Arabidopsis thaliana
AT4G38910 1.0kb upstream 1.0kb upstream 1000 false Chr4: 18146929-18147928 Arabidopsis thaliana
AT4G38910 1.0kb downstream 1.0kb downstream 2690 true Chr4: 18144239-18146928 Arabidopsis thaliana
AT4G38910 1.0kb downstream 1.0kb downstream 1000 false Chr4: 18144239-18145238 Arabidopsis thaliana
AT4G38910 2.0kb upstream 2.0kb upstream 3690 true Chr4: 18145239-18148928 Arabidopsis thaliana
AT4G38910 2.0kb upstream 2.0kb upstream 2000 false Chr4: 18146929-18148928 Arabidopsis thaliana
AT4G38910 2.0kb downstream 2.0kb downstream 3690 true Chr4: 18143239-18146928 Arabidopsis thaliana
AT4G38910 2.0kb downstream 2.0kb downstream 2000 false Chr4: 18143239-18145238 Arabidopsis thaliana
AT4G38910 5.0kb upstream 5.0kb upstream 6690 true Chr4: 18145239-18151928 Arabidopsis thaliana
AT4G38910 5.0kb upstream 5.0kb upstream 5000 false Chr4: 18146929-18151928 Arabidopsis thaliana
AT4G38910 5.0kb downstream 5.0kb downstream 6690 true Chr4: 18140239-18146928 Arabidopsis thaliana
AT4G38910 5.0kb downstream 5.0kb downstream 5000 false Chr4: 18140239-18145238 Arabidopsis thaliana
AT4G38910 10.0kb upstream 10.0kb upstream 11690 true Chr4: 18145239-18156928 Arabidopsis thaliana
AT4G38910 10.0kb upstream 10.0kb upstream 10000 false Chr4: 18146929-18156928 Arabidopsis thaliana
AT4G38910 10.0kb downstream 10.0kb downstream 11690 true Chr4: 18135239-18146928 Arabidopsis thaliana
AT4G38910 10.0kb downstream 10.0kb downstream 10000 false Chr4: 18135239-18145238 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369594 5261 Brassicaceae View MSA
123838572 5264 Brassicales-Malvales View MSA
124337369 5266 SBM View MSA
124244703 5268 Malvidae View MSA
124062231 5270 Rosid View MSA
123743599 5271 Pentapetalae View MSA
122787998 5272 Eudicot View MSA
122045937 5273 Angiosperm View MSA
121350358 5274 Embryophyte View MSA
123381694 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.651        
cufflinks 1.715       High
cufflinks 1.144       Low
cufflinks 1.557        
cufflinks 1.392        
cufflinks 1.454        

0 Strain