Gene : AT5G01230 A. thaliana TAIR10
Defline:  (1 of 1) 2.1.1.205 - tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase Genomic Order:  26
Name:  ? AT5G01230 Secondary Identifier:  ? PAC:19666412
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-6829 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G01230 0.5kb upstream 0.5kb upstream 3601 true Chr5: 92601-96201 Arabidopsis thaliana
AT5G01230 0.5kb upstream 0.5kb upstream 500 false Chr5: 95702-96201 Arabidopsis thaliana
AT5G01230 0.5kb downstream 0.5kb downstream 3601 true Chr5: 92101-95701 Arabidopsis thaliana
AT5G01230 0.5kb downstream 0.5kb downstream 500 false Chr5: 92101-92600 Arabidopsis thaliana
AT5G01230 1.0kb upstream 1.0kb upstream 4101 true Chr5: 92601-96701 Arabidopsis thaliana
AT5G01230 1.0kb upstream 1.0kb upstream 1000 false Chr5: 95702-96701 Arabidopsis thaliana
AT5G01230 1.0kb downstream 1.0kb downstream 4101 true Chr5: 91601-95701 Arabidopsis thaliana
AT5G01230 1.0kb downstream 1.0kb downstream 1000 false Chr5: 91601-92600 Arabidopsis thaliana
AT5G01230 2.0kb upstream 2.0kb upstream 5101 true Chr5: 92601-97701 Arabidopsis thaliana
AT5G01230 2.0kb upstream 2.0kb upstream 2000 false Chr5: 95702-97701 Arabidopsis thaliana
AT5G01230 2.0kb downstream 2.0kb downstream 5101 true Chr5: 90601-95701 Arabidopsis thaliana
AT5G01230 2.0kb downstream 2.0kb downstream 2000 false Chr5: 90601-92600 Arabidopsis thaliana
AT5G01230 5.0kb upstream 5.0kb upstream 8101 true Chr5: 92601-100701 Arabidopsis thaliana
AT5G01230 5.0kb upstream 5.0kb upstream 5000 false Chr5: 95702-100701 Arabidopsis thaliana
AT5G01230 5.0kb downstream 5.0kb downstream 8101 true Chr5: 87601-95701 Arabidopsis thaliana
AT5G01230 5.0kb downstream 5.0kb downstream 5000 false Chr5: 87601-92600 Arabidopsis thaliana
AT5G01230 10.0kb upstream 10.0kb upstream 13101 true Chr5: 92601-105701 Arabidopsis thaliana
AT5G01230 10.0kb upstream 10.0kb upstream 10000 false Chr5: 95702-105701 Arabidopsis thaliana
AT5G01230 10.0kb downstream 10.0kb downstream 13101 true Chr5: 82601-95701 Arabidopsis thaliana
AT5G01230 10.0kb downstream 10.0kb downstream 10000 false Chr5: 82601-92600 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373668 5261 Brassicaceae View MSA
123831274 5264 Brassicales-Malvales View MSA
124345014 5266 SBM View MSA
124239012 5268 Malvidae View MSA
124067188 5270 Rosid View MSA
123742065 5271 Pentapetalae View MSA
122791552 5272 Eudicot View MSA
122044785 5273 Angiosperm View MSA
121347520 5274 Embryophyte View MSA
123424894 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.669        
cufflinks 2.325        
cufflinks 1.276        
cufflinks 2.643       High
cufflinks 1.114       Low
cufflinks 2.283        

0 Strain