Gene : SQD2 A. thaliana TAIR10
Primary Identifier:  ? AT5G01220 Defline:  (1 of 1) K06119 - sulfoquinovosyltransferase (SQD2)
Genomic Order:  24 Name:  ? AT5G01220
Secondary Identifier:  ? PAC:19669451
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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G01220 0.5kb upstream 0.5kb upstream 3902 true Chr5: 86585-90486 Arabidopsis thaliana
AT5G01220 0.5kb upstream 0.5kb upstream 500 false Chr5: 89987-90486 Arabidopsis thaliana
AT5G01220 0.5kb downstream 0.5kb downstream 3902 true Chr5: 86085-89986 Arabidopsis thaliana
AT5G01220 0.5kb downstream 0.5kb downstream 500 false Chr5: 86085-86584 Arabidopsis thaliana
AT5G01220 1.0kb upstream 1.0kb upstream 4402 true Chr5: 86585-90986 Arabidopsis thaliana
AT5G01220 1.0kb upstream 1.0kb upstream 1000 false Chr5: 89987-90986 Arabidopsis thaliana
AT5G01220 1.0kb downstream 1.0kb downstream 4402 true Chr5: 85585-89986 Arabidopsis thaliana
AT5G01220 1.0kb downstream 1.0kb downstream 1000 false Chr5: 85585-86584 Arabidopsis thaliana
AT5G01220 2.0kb upstream 2.0kb upstream 5402 true Chr5: 86585-91986 Arabidopsis thaliana
AT5G01220 2.0kb upstream 2.0kb upstream 2000 false Chr5: 89987-91986 Arabidopsis thaliana
AT5G01220 2.0kb downstream 2.0kb downstream 5402 true Chr5: 84585-89986 Arabidopsis thaliana
AT5G01220 2.0kb downstream 2.0kb downstream 2000 false Chr5: 84585-86584 Arabidopsis thaliana
AT5G01220 5.0kb upstream 5.0kb upstream 8402 true Chr5: 86585-94986 Arabidopsis thaliana
AT5G01220 5.0kb upstream 5.0kb upstream 5000 false Chr5: 89987-94986 Arabidopsis thaliana
AT5G01220 5.0kb downstream 5.0kb downstream 8402 true Chr5: 81585-89986 Arabidopsis thaliana
AT5G01220 5.0kb downstream 5.0kb downstream 5000 false Chr5: 81585-86584 Arabidopsis thaliana
AT5G01220 10.0kb upstream 10.0kb upstream 13402 true Chr5: 86585-99986 Arabidopsis thaliana
AT5G01220 10.0kb upstream 10.0kb upstream 10000 false Chr5: 89987-99986 Arabidopsis thaliana
AT5G01220 10.0kb downstream 10.0kb downstream 13402 true Chr5: 76585-89986 Arabidopsis thaliana
AT5G01220 10.0kb downstream 10.0kb downstream 10000 false Chr5: 76585-86584 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379138 5261 Brassicaceae View MSA
123837142 5264 Brassicales-Malvales View MSA
124345613 5266 SBM View MSA
124241184 5268 Malvidae View MSA
124066463 5270 Rosid View MSA
123749252 5271 Pentapetalae View MSA
122792766 5272 Eudicot View MSA
122049037 5273 Angiosperm View MSA
123429006 5275 Viridiplantae View MSA
121344163 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.771        
cufflinks 3.69       Low
cufflinks 21.033        
cufflinks 5.229        
cufflinks 17.978        
cufflinks 5.076        

0 Strain