Gene : AT4G39880 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12059:SF5 - 39S RIBOSOMAL PROTEIN L23, MITOCHONDRIAL Genomic Order:  4098
Name:  ? AT4G39880 Secondary Identifier:  ? PAC:19648275
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G39880 0.5kb upstream 0.5kb upstream 1302 true Chr4: 18504037-18505338 Arabidopsis thaliana
AT4G39880 0.5kb upstream 0.5kb upstream 500 false Chr4: 18504037-18504536 Arabidopsis thaliana
AT4G39880 0.5kb downstream 0.5kb downstream 1302 true Chr4: 18504537-18505838 Arabidopsis thaliana
AT4G39880 0.5kb downstream 0.5kb downstream 500 false Chr4: 18505339-18505838 Arabidopsis thaliana
AT4G39880 1.0kb upstream 1.0kb upstream 1802 true Chr4: 18503537-18505338 Arabidopsis thaliana
AT4G39880 1.0kb upstream 1.0kb upstream 1000 false Chr4: 18503537-18504536 Arabidopsis thaliana
AT4G39880 1.0kb downstream 1.0kb downstream 1802 true Chr4: 18504537-18506338 Arabidopsis thaliana
AT4G39880 1.0kb downstream 1.0kb downstream 1000 false Chr4: 18505339-18506338 Arabidopsis thaliana
AT4G39880 2.0kb upstream 2.0kb upstream 2802 true Chr4: 18502537-18505338 Arabidopsis thaliana
AT4G39880 2.0kb upstream 2.0kb upstream 2000 false Chr4: 18502537-18504536 Arabidopsis thaliana
AT4G39880 2.0kb downstream 2.0kb downstream 2802 true Chr4: 18504537-18507338 Arabidopsis thaliana
AT4G39880 2.0kb downstream 2.0kb downstream 2000 false Chr4: 18505339-18507338 Arabidopsis thaliana
AT4G39880 5.0kb upstream 5.0kb upstream 5802 true Chr4: 18499537-18505338 Arabidopsis thaliana
AT4G39880 5.0kb upstream 5.0kb upstream 5000 false Chr4: 18499537-18504536 Arabidopsis thaliana
AT4G39880 5.0kb downstream 5.0kb downstream 5802 true Chr4: 18504537-18510338 Arabidopsis thaliana
AT4G39880 5.0kb downstream 5.0kb downstream 5000 false Chr4: 18505339-18510338 Arabidopsis thaliana
AT4G39880 10.0kb upstream 10.0kb upstream 10802 true Chr4: 18494537-18505338 Arabidopsis thaliana
AT4G39880 10.0kb upstream 10.0kb upstream 10000 false Chr4: 18494537-18504536 Arabidopsis thaliana
AT4G39880 10.0kb downstream 10.0kb downstream 10802 true Chr4: 18504537-18515338 Arabidopsis thaliana
AT4G39880 10.0kb downstream 10.0kb downstream 10000 false Chr4: 18505339-18515338 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371614 5261 Brassicaceae View MSA
123829562 5264 Brassicales-Malvales View MSA
124343837 5266 SBM View MSA
124242638 5268 Malvidae View MSA
124068912 5270 Rosid View MSA
123740865 5271 Pentapetalae View MSA
122789044 5272 Eudicot View MSA
122044444 5273 Angiosperm View MSA
121349805 5274 Embryophyte View MSA
123426659 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 33.228     High  
cufflinks 35.661     High  
cufflinks 33.139     High  
cufflinks 35.16     High  
cufflinks 23.516       Low
cufflinks 40.15     High High

0 Strain