Gene : AT4G39770 A. thaliana TAIR10
Defline:  (1 of 3) PTHR10788//PTHR10788:SF19 - TREHALOSE-6-PHOSPHATE SYNTHASE // TREHALOSE-PHOSPHATE PHOSPHATASE E-RELATED Genomic Order:  4086
Name:  ? AT4G39770 Secondary Identifier:  ? PAC:19646740
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G39770 0.5kb upstream 0.5kb upstream 2814 true Chr4: 18448980-18451793 Arabidopsis thaliana
AT4G39770 0.5kb upstream 0.5kb upstream 500 false Chr4: 18451294-18451793 Arabidopsis thaliana
AT4G39770 0.5kb downstream 0.5kb downstream 2814 true Chr4: 18448480-18451293 Arabidopsis thaliana
AT4G39770 0.5kb downstream 0.5kb downstream 500 false Chr4: 18448480-18448979 Arabidopsis thaliana
AT4G39770 1.0kb upstream 1.0kb upstream 3314 true Chr4: 18448980-18452293 Arabidopsis thaliana
AT4G39770 1.0kb upstream 1.0kb upstream 1000 false Chr4: 18451294-18452293 Arabidopsis thaliana
AT4G39770 1.0kb downstream 1.0kb downstream 3314 true Chr4: 18447980-18451293 Arabidopsis thaliana
AT4G39770 1.0kb downstream 1.0kb downstream 1000 false Chr4: 18447980-18448979 Arabidopsis thaliana
AT4G39770 2.0kb upstream 2.0kb upstream 4314 true Chr4: 18448980-18453293 Arabidopsis thaliana
AT4G39770 2.0kb upstream 2.0kb upstream 2000 false Chr4: 18451294-18453293 Arabidopsis thaliana
AT4G39770 2.0kb downstream 2.0kb downstream 4314 true Chr4: 18446980-18451293 Arabidopsis thaliana
AT4G39770 2.0kb downstream 2.0kb downstream 2000 false Chr4: 18446980-18448979 Arabidopsis thaliana
AT4G39770 5.0kb upstream 5.0kb upstream 7314 true Chr4: 18448980-18456293 Arabidopsis thaliana
AT4G39770 5.0kb upstream 5.0kb upstream 5000 false Chr4: 18451294-18456293 Arabidopsis thaliana
AT4G39770 5.0kb downstream 5.0kb downstream 7314 true Chr4: 18443980-18451293 Arabidopsis thaliana
AT4G39770 5.0kb downstream 5.0kb downstream 5000 false Chr4: 18443980-18448979 Arabidopsis thaliana
AT4G39770 10.0kb upstream 10.0kb upstream 12314 true Chr4: 18448980-18461293 Arabidopsis thaliana
AT4G39770 10.0kb upstream 10.0kb upstream 10000 false Chr4: 18451294-18461293 Arabidopsis thaliana
AT4G39770 10.0kb downstream 10.0kb downstream 12314 true Chr4: 18438980-18451293 Arabidopsis thaliana
AT4G39770 10.0kb downstream 10.0kb downstream 10000 false Chr4: 18438980-18448979 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372272 5261 Brassicaceae View MSA
123800330 5264 Brassicales-Malvales View MSA
124297752 5266 SBM View MSA
124249781 5268 Malvidae View MSA
124069564 5270 Rosid View MSA
123746966 5271 Pentapetalae View MSA
122786046 5272 Eudicot View MSA
122042129 5273 Angiosperm View MSA
121351669 5274 Embryophyte View MSA
123427869 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.216        
cufflinks 7.788        
cufflinks 1.558       Low
cufflinks 11.842        
cufflinks 1.405       Low
cufflinks 11.205        

0 Strain