Gene : AT5G02750 A. thaliana TAIR10
Defline:  (1 of 2) PTHR22763//PTHR22763:SF20 - RING ZINC FINGER PROTEIN // E3 LIGASE SHOOT GRAVITROPISM 9 Genomic Order:  184
Name:  ? AT5G02750 Secondary Identifier:  ? PAC:19672694
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G02750 0.5kb upstream 0.5kb upstream 1586 true Chr5: 619594-621179 Arabidopsis thaliana
AT5G02750 0.5kb upstream 0.5kb upstream 500 false Chr5: 619594-620093 Arabidopsis thaliana
AT5G02750 0.5kb downstream 0.5kb downstream 1586 true Chr5: 620094-621679 Arabidopsis thaliana
AT5G02750 0.5kb downstream 0.5kb downstream 500 false Chr5: 621180-621679 Arabidopsis thaliana
AT5G02750 1.0kb upstream 1.0kb upstream 2086 true Chr5: 619094-621179 Arabidopsis thaliana
AT5G02750 1.0kb upstream 1.0kb upstream 1000 false Chr5: 619094-620093 Arabidopsis thaliana
AT5G02750 1.0kb downstream 1.0kb downstream 2086 true Chr5: 620094-622179 Arabidopsis thaliana
AT5G02750 1.0kb downstream 1.0kb downstream 1000 false Chr5: 621180-622179 Arabidopsis thaliana
AT5G02750 2.0kb upstream 2.0kb upstream 3086 true Chr5: 618094-621179 Arabidopsis thaliana
AT5G02750 2.0kb upstream 2.0kb upstream 2000 false Chr5: 618094-620093 Arabidopsis thaliana
AT5G02750 2.0kb downstream 2.0kb downstream 3086 true Chr5: 620094-623179 Arabidopsis thaliana
AT5G02750 2.0kb downstream 2.0kb downstream 2000 false Chr5: 621180-623179 Arabidopsis thaliana
AT5G02750 5.0kb upstream 5.0kb upstream 6086 true Chr5: 615094-621179 Arabidopsis thaliana
AT5G02750 5.0kb upstream 5.0kb upstream 5000 false Chr5: 615094-620093 Arabidopsis thaliana
AT5G02750 5.0kb downstream 5.0kb downstream 6086 true Chr5: 620094-626179 Arabidopsis thaliana
AT5G02750 5.0kb downstream 5.0kb downstream 5000 false Chr5: 621180-626179 Arabidopsis thaliana
AT5G02750 10.0kb upstream 10.0kb upstream 11086 true Chr5: 610094-621179 Arabidopsis thaliana
AT5G02750 10.0kb upstream 10.0kb upstream 10000 false Chr5: 610094-620093 Arabidopsis thaliana
AT5G02750 10.0kb downstream 10.0kb downstream 11086 true Chr5: 620094-631179 Arabidopsis thaliana
AT5G02750 10.0kb downstream 10.0kb downstream 10000 false Chr5: 621180-631179 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366960 5261 Brassicaceae View MSA
123827606 5264 Brassicales-Malvales View MSA
124338150 5266 SBM View MSA
124238693 5268 Malvidae View MSA
124063596 5270 Rosid View MSA
123746607 5271 Pentapetalae View MSA
122791525 5272 Eudicot View MSA
122041904 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121309901 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.225        
cufflinks 2.144        
cufflinks 0.79        
cufflinks 3.611       High
cufflinks 0.541       Low
cufflinks 3.536       High

0 Strain