Gene : AT5G04885 A. thaliana TAIR10
Defline:  (1 of 1) PTHR30620:SF35 - GLYCOSYL HYDROLASE FAMILY PROTEIN Genomic Order:  411
Name:  ? AT5G04885 Secondary Identifier:  ? PAC:19673149
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G04885 0.5kb upstream 0.5kb upstream 4581 true Chr5: 1422299-1426879 Arabidopsis thaliana
AT5G04885 0.5kb upstream 0.5kb upstream 500 false Chr5: 1422299-1422798 Arabidopsis thaliana
AT5G04885 0.5kb downstream 0.5kb downstream 4581 true Chr5: 1422799-1427379 Arabidopsis thaliana
AT5G04885 0.5kb downstream 0.5kb downstream 500 false Chr5: 1426880-1427379 Arabidopsis thaliana
AT5G04885 1.0kb upstream 1.0kb upstream 5081 true Chr5: 1421799-1426879 Arabidopsis thaliana
AT5G04885 1.0kb upstream 1.0kb upstream 1000 false Chr5: 1421799-1422798 Arabidopsis thaliana
AT5G04885 1.0kb downstream 1.0kb downstream 5081 true Chr5: 1422799-1427879 Arabidopsis thaliana
AT5G04885 1.0kb downstream 1.0kb downstream 1000 false Chr5: 1426880-1427879 Arabidopsis thaliana
AT5G04885 2.0kb upstream 2.0kb upstream 6081 true Chr5: 1420799-1426879 Arabidopsis thaliana
AT5G04885 2.0kb upstream 2.0kb upstream 2000 false Chr5: 1420799-1422798 Arabidopsis thaliana
AT5G04885 2.0kb downstream 2.0kb downstream 6081 true Chr5: 1422799-1428879 Arabidopsis thaliana
AT5G04885 2.0kb downstream 2.0kb downstream 2000 false Chr5: 1426880-1428879 Arabidopsis thaliana
AT5G04885 5.0kb upstream 5.0kb upstream 9081 true Chr5: 1417799-1426879 Arabidopsis thaliana
AT5G04885 5.0kb upstream 5.0kb upstream 5000 false Chr5: 1417799-1422798 Arabidopsis thaliana
AT5G04885 5.0kb downstream 5.0kb downstream 9081 true Chr5: 1422799-1431879 Arabidopsis thaliana
AT5G04885 5.0kb downstream 5.0kb downstream 5000 false Chr5: 1426880-1431879 Arabidopsis thaliana
AT5G04885 10.0kb upstream 10.0kb upstream 14081 true Chr5: 1412799-1426879 Arabidopsis thaliana
AT5G04885 10.0kb upstream 10.0kb upstream 10000 false Chr5: 1412799-1422798 Arabidopsis thaliana
AT5G04885 10.0kb downstream 10.0kb downstream 14081 true Chr5: 1422799-1436879 Arabidopsis thaliana
AT5G04885 10.0kb downstream 10.0kb downstream 10000 false Chr5: 1426880-1436879 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370414 5261 Brassicaceae View MSA
123840775 5264 Brassicales-Malvales View MSA
124343789 5266 SBM View MSA
124236833 5268 Malvidae View MSA
124072770 5270 Rosid View MSA
123751915 5271 Pentapetalae View MSA
122795709 5272 Eudicot View MSA
122045889 5273 Angiosperm View MSA
121351696 5274 Embryophyte View MSA
123382280 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.455        
cufflinks 15.229        
cufflinks 6.002       Low
cufflinks 14.362        
cufflinks 5.183       Low
cufflinks 18.518       High

0 Strain