Gene : AT5G04550 A. thaliana TAIR10
Defline:  (1 of 6) PF05003//PF11961 - Protein of unknown function (DUF668) (DUF668) // Domain of unknown function (DUF3475) (DUF3475) Genomic Order:  380
Name:  ? AT5G04550 Secondary Identifier:  ? PAC:19668707
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G04550 0.5kb upstream 0.5kb upstream 3437 true Chr5: 1303180-1306616 Arabidopsis thaliana
AT5G04550 0.5kb upstream 0.5kb upstream 500 false Chr5: 1306117-1306616 Arabidopsis thaliana
AT5G04550 0.5kb downstream 0.5kb downstream 3437 true Chr5: 1302680-1306116 Arabidopsis thaliana
AT5G04550 0.5kb downstream 0.5kb downstream 500 false Chr5: 1302680-1303179 Arabidopsis thaliana
AT5G04550 1.0kb upstream 1.0kb upstream 3937 true Chr5: 1303180-1307116 Arabidopsis thaliana
AT5G04550 1.0kb upstream 1.0kb upstream 1000 false Chr5: 1306117-1307116 Arabidopsis thaliana
AT5G04550 1.0kb downstream 1.0kb downstream 3937 true Chr5: 1302180-1306116 Arabidopsis thaliana
AT5G04550 1.0kb downstream 1.0kb downstream 1000 false Chr5: 1302180-1303179 Arabidopsis thaliana
AT5G04550 2.0kb upstream 2.0kb upstream 4937 true Chr5: 1303180-1308116 Arabidopsis thaliana
AT5G04550 2.0kb upstream 2.0kb upstream 2000 false Chr5: 1306117-1308116 Arabidopsis thaliana
AT5G04550 2.0kb downstream 2.0kb downstream 4937 true Chr5: 1301180-1306116 Arabidopsis thaliana
AT5G04550 2.0kb downstream 2.0kb downstream 2000 false Chr5: 1301180-1303179 Arabidopsis thaliana
AT5G04550 5.0kb upstream 5.0kb upstream 7937 true Chr5: 1303180-1311116 Arabidopsis thaliana
AT5G04550 5.0kb upstream 5.0kb upstream 5000 false Chr5: 1306117-1311116 Arabidopsis thaliana
AT5G04550 5.0kb downstream 5.0kb downstream 7937 true Chr5: 1298180-1306116 Arabidopsis thaliana
AT5G04550 5.0kb downstream 5.0kb downstream 5000 false Chr5: 1298180-1303179 Arabidopsis thaliana
AT5G04550 10.0kb upstream 10.0kb upstream 12937 true Chr5: 1303180-1316116 Arabidopsis thaliana
AT5G04550 10.0kb upstream 10.0kb upstream 10000 false Chr5: 1306117-1316116 Arabidopsis thaliana
AT5G04550 10.0kb downstream 10.0kb downstream 12937 true Chr5: 1293180-1306116 Arabidopsis thaliana
AT5G04550 10.0kb downstream 10.0kb downstream 10000 false Chr5: 1293180-1303179 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368249 5261 Brassicaceae View MSA
123831814 5264 Brassicales-Malvales View MSA
124350094 5266 SBM View MSA
124237921 5268 Malvidae View MSA
124069085 5270 Rosid View MSA
123744675 5271 Pentapetalae View MSA
122797750 5272 Eudicot View MSA
122049619 5273 Angiosperm View MSA
121344351 5274 Embryophyte View MSA
123380027 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 37.914     High  
cufflinks 49.735     High  
cufflinks 27.881     High Low
cufflinks 45.881     High  
cufflinks 26.316     High Low
cufflinks 49.324     High  

0 Strain