Gene : AT5G04440 A. thaliana TAIR10
Defline:  (1 of 4) PF09366 - Protein of unknown function (DUF1997) (DUF1997) Genomic Order:  370
Name:  ? AT5G04440 Secondary Identifier:  ? PAC:19672962
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G04440 0.5kb upstream 0.5kb upstream 2610 true Chr5: 1254344-1256953 Arabidopsis thaliana
AT5G04440 0.5kb upstream 0.5kb upstream 500 false Chr5: 1254344-1254843 Arabidopsis thaliana
AT5G04440 0.5kb downstream 0.5kb downstream 2610 true Chr5: 1254844-1257453 Arabidopsis thaliana
AT5G04440 0.5kb downstream 0.5kb downstream 500 false Chr5: 1256954-1257453 Arabidopsis thaliana
AT5G04440 1.0kb upstream 1.0kb upstream 3110 true Chr5: 1253844-1256953 Arabidopsis thaliana
AT5G04440 1.0kb upstream 1.0kb upstream 1000 false Chr5: 1253844-1254843 Arabidopsis thaliana
AT5G04440 1.0kb downstream 1.0kb downstream 3110 true Chr5: 1254844-1257953 Arabidopsis thaliana
AT5G04440 1.0kb downstream 1.0kb downstream 1000 false Chr5: 1256954-1257953 Arabidopsis thaliana
AT5G04440 2.0kb upstream 2.0kb upstream 4110 true Chr5: 1252844-1256953 Arabidopsis thaliana
AT5G04440 2.0kb upstream 2.0kb upstream 2000 false Chr5: 1252844-1254843 Arabidopsis thaliana
AT5G04440 2.0kb downstream 2.0kb downstream 4110 true Chr5: 1254844-1258953 Arabidopsis thaliana
AT5G04440 2.0kb downstream 2.0kb downstream 2000 false Chr5: 1256954-1258953 Arabidopsis thaliana
AT5G04440 5.0kb upstream 5.0kb upstream 7110 true Chr5: 1249844-1256953 Arabidopsis thaliana
AT5G04440 5.0kb upstream 5.0kb upstream 5000 false Chr5: 1249844-1254843 Arabidopsis thaliana
AT5G04440 5.0kb downstream 5.0kb downstream 7110 true Chr5: 1254844-1261953 Arabidopsis thaliana
AT5G04440 5.0kb downstream 5.0kb downstream 5000 false Chr5: 1256954-1261953 Arabidopsis thaliana
AT5G04440 10.0kb upstream 10.0kb upstream 12110 true Chr5: 1244844-1256953 Arabidopsis thaliana
AT5G04440 10.0kb upstream 10.0kb upstream 10000 false Chr5: 1244844-1254843 Arabidopsis thaliana
AT5G04440 10.0kb downstream 10.0kb downstream 12110 true Chr5: 1254844-1266953 Arabidopsis thaliana
AT5G04440 10.0kb downstream 10.0kb downstream 10000 false Chr5: 1256954-1266953 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363177 5261 Brassicaceae View MSA
123835345 5264 Brassicales-Malvales View MSA
124337128 5266 SBM View MSA
124242695 5268 Malvidae View MSA
124068391 5270 Rosid View MSA
123740182 5271 Pentapetalae View MSA
122791833 5272 Eudicot View MSA
122045233 5273 Angiosperm View MSA
121346827 5274 Embryophyte View MSA
123423879 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.562        
cufflinks 8.406        
cufflinks 25.101        
cufflinks 8.971        
cufflinks 22.777        
cufflinks 7.908       Low

0 Strain