Gene : AT5G04420 A. thaliana TAIR10
Defline:  (1 of 1) PTHR23244//PTHR23244:SF321 - KELCH REPEAT DOMAIN // KELCH REPEAT-CONTAINING PROTEIN 1-RELATED Genomic Order:  368
Name:  ? AT5G04420 Secondary Identifier:  ? PAC:19670820
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G04420 0.5kb upstream 0.5kb upstream 3840 true Chr5: 1246604-1250443 Arabidopsis thaliana
AT5G04420 0.5kb upstream 0.5kb upstream 500 false Chr5: 1249944-1250443 Arabidopsis thaliana
AT5G04420 0.5kb downstream 0.5kb downstream 3840 true Chr5: 1246104-1249943 Arabidopsis thaliana
AT5G04420 0.5kb downstream 0.5kb downstream 500 false Chr5: 1246104-1246603 Arabidopsis thaliana
AT5G04420 1.0kb upstream 1.0kb upstream 4340 true Chr5: 1246604-1250943 Arabidopsis thaliana
AT5G04420 1.0kb upstream 1.0kb upstream 1000 false Chr5: 1249944-1250943 Arabidopsis thaliana
AT5G04420 1.0kb downstream 1.0kb downstream 4340 true Chr5: 1245604-1249943 Arabidopsis thaliana
AT5G04420 1.0kb downstream 1.0kb downstream 1000 false Chr5: 1245604-1246603 Arabidopsis thaliana
AT5G04420 2.0kb upstream 2.0kb upstream 5340 true Chr5: 1246604-1251943 Arabidopsis thaliana
AT5G04420 2.0kb upstream 2.0kb upstream 2000 false Chr5: 1249944-1251943 Arabidopsis thaliana
AT5G04420 2.0kb downstream 2.0kb downstream 5340 true Chr5: 1244604-1249943 Arabidopsis thaliana
AT5G04420 2.0kb downstream 2.0kb downstream 2000 false Chr5: 1244604-1246603 Arabidopsis thaliana
AT5G04420 5.0kb upstream 5.0kb upstream 8340 true Chr5: 1246604-1254943 Arabidopsis thaliana
AT5G04420 5.0kb upstream 5.0kb upstream 5000 false Chr5: 1249944-1254943 Arabidopsis thaliana
AT5G04420 5.0kb downstream 5.0kb downstream 8340 true Chr5: 1241604-1249943 Arabidopsis thaliana
AT5G04420 5.0kb downstream 5.0kb downstream 5000 false Chr5: 1241604-1246603 Arabidopsis thaliana
AT5G04420 10.0kb upstream 10.0kb upstream 13340 true Chr5: 1246604-1259943 Arabidopsis thaliana
AT5G04420 10.0kb upstream 10.0kb upstream 10000 false Chr5: 1249944-1259943 Arabidopsis thaliana
AT5G04420 10.0kb downstream 10.0kb downstream 13340 true Chr5: 1236604-1249943 Arabidopsis thaliana
AT5G04420 10.0kb downstream 10.0kb downstream 10000 false Chr5: 1236604-1246603 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362762 5261 Brassicaceae View MSA
123830575 5264 Brassicales-Malvales View MSA
124339634 5266 SBM View MSA
124247823 5268 Malvidae View MSA
124061689 5270 Rosid View MSA
123737703 5271 Pentapetalae View MSA
122787027 5272 Eudicot View MSA
122042964 5273 Angiosperm View MSA
121351025 5274 Embryophyte View MSA
123428379 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.57        
cufflinks 6.272        
cufflinks 3.326        
cufflinks 6.238        
cufflinks 3.084       Low
cufflinks 6.509        

0 Strain