Gene : SNX1 A. thaliana TAIR10
Primary Identifier:  ? AT5G06140 Defline:  (1 of 1) K17917 - sorting nexin-1/2 (SNX1_2)
Genomic Order:  546 Name:  ? AT5G06140
Secondary Identifier:  ? PAC:19672747
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0 Pathways

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G06140 0.5kb upstream 0.5kb upstream 3278 true Chr5: 1856008-1859285 Arabidopsis thaliana
AT5G06140 0.5kb upstream 0.5kb upstream 500 false Chr5: 1858786-1859285 Arabidopsis thaliana
AT5G06140 0.5kb downstream 0.5kb downstream 3278 true Chr5: 1855508-1858785 Arabidopsis thaliana
AT5G06140 0.5kb downstream 0.5kb downstream 500 false Chr5: 1855508-1856007 Arabidopsis thaliana
AT5G06140 1.0kb upstream 1.0kb upstream 3778 true Chr5: 1856008-1859785 Arabidopsis thaliana
AT5G06140 1.0kb upstream 1.0kb upstream 1000 false Chr5: 1858786-1859785 Arabidopsis thaliana
AT5G06140 1.0kb downstream 1.0kb downstream 3778 true Chr5: 1855008-1858785 Arabidopsis thaliana
AT5G06140 1.0kb downstream 1.0kb downstream 1000 false Chr5: 1855008-1856007 Arabidopsis thaliana
AT5G06140 2.0kb upstream 2.0kb upstream 4778 true Chr5: 1856008-1860785 Arabidopsis thaliana
AT5G06140 2.0kb upstream 2.0kb upstream 2000 false Chr5: 1858786-1860785 Arabidopsis thaliana
AT5G06140 2.0kb downstream 2.0kb downstream 4778 true Chr5: 1854008-1858785 Arabidopsis thaliana
AT5G06140 2.0kb downstream 2.0kb downstream 2000 false Chr5: 1854008-1856007 Arabidopsis thaliana
AT5G06140 5.0kb upstream 5.0kb upstream 7778 true Chr5: 1856008-1863785 Arabidopsis thaliana
AT5G06140 5.0kb upstream 5.0kb upstream 5000 false Chr5: 1858786-1863785 Arabidopsis thaliana
AT5G06140 5.0kb downstream 5.0kb downstream 7778 true Chr5: 1851008-1858785 Arabidopsis thaliana
AT5G06140 5.0kb downstream 5.0kb downstream 5000 false Chr5: 1851008-1856007 Arabidopsis thaliana
AT5G06140 10.0kb upstream 10.0kb upstream 12778 true Chr5: 1856008-1868785 Arabidopsis thaliana
AT5G06140 10.0kb upstream 10.0kb upstream 10000 false Chr5: 1858786-1868785 Arabidopsis thaliana
AT5G06140 10.0kb downstream 10.0kb downstream 12778 true Chr5: 1846008-1858785 Arabidopsis thaliana
AT5G06140 10.0kb downstream 10.0kb downstream 10000 false Chr5: 1846008-1856007 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363824 5261 Brassicaceae View MSA
123829702 5264 Brassicales-Malvales View MSA
124339963 5266 SBM View MSA
124238057 5268 Malvidae View MSA
124066249 5270 Rosid View MSA
123741756 5271 Pentapetalae View MSA
122792565 5272 Eudicot View MSA
122045293 5273 Angiosperm View MSA
121345603 5274 Embryophyte View MSA
123428162 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.656        
cufflinks 32.643     High High
cufflinks 23.707        
cufflinks 32.499     High High
cufflinks 23.031        
cufflinks 26.949        

0 Strain