Gene : AT5G08610 A. thaliana TAIR10
Defline:  (1 of 3) PTHR24031:SF265 - DEAD-BOX ATP-DEPENDENT RNA HELICASE 25-RELATED Genomic Order:  809
Name:  ? AT5G08610 Secondary Identifier:  ? PAC:19670133
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G08610 0.5kb upstream 0.5kb upstream 4421 true Chr5: 2789795-2794215 Arabidopsis thaliana
AT5G08610 0.5kb upstream 0.5kb upstream 500 false Chr5: 2789795-2790294 Arabidopsis thaliana
AT5G08610 0.5kb downstream 0.5kb downstream 4421 true Chr5: 2790295-2794715 Arabidopsis thaliana
AT5G08610 0.5kb downstream 0.5kb downstream 500 false Chr5: 2794216-2794715 Arabidopsis thaliana
AT5G08610 1.0kb upstream 1.0kb upstream 4921 true Chr5: 2789295-2794215 Arabidopsis thaliana
AT5G08610 1.0kb upstream 1.0kb upstream 1000 false Chr5: 2789295-2790294 Arabidopsis thaliana
AT5G08610 1.0kb downstream 1.0kb downstream 4921 true Chr5: 2790295-2795215 Arabidopsis thaliana
AT5G08610 1.0kb downstream 1.0kb downstream 1000 false Chr5: 2794216-2795215 Arabidopsis thaliana
AT5G08610 2.0kb upstream 2.0kb upstream 5921 true Chr5: 2788295-2794215 Arabidopsis thaliana
AT5G08610 2.0kb upstream 2.0kb upstream 2000 false Chr5: 2788295-2790294 Arabidopsis thaliana
AT5G08610 2.0kb downstream 2.0kb downstream 5921 true Chr5: 2790295-2796215 Arabidopsis thaliana
AT5G08610 2.0kb downstream 2.0kb downstream 2000 false Chr5: 2794216-2796215 Arabidopsis thaliana
AT5G08610 5.0kb upstream 5.0kb upstream 8921 true Chr5: 2785295-2794215 Arabidopsis thaliana
AT5G08610 5.0kb upstream 5.0kb upstream 5000 false Chr5: 2785295-2790294 Arabidopsis thaliana
AT5G08610 5.0kb downstream 5.0kb downstream 8921 true Chr5: 2790295-2799215 Arabidopsis thaliana
AT5G08610 5.0kb downstream 5.0kb downstream 5000 false Chr5: 2794216-2799215 Arabidopsis thaliana
AT5G08610 10.0kb upstream 10.0kb upstream 13921 true Chr5: 2780295-2794215 Arabidopsis thaliana
AT5G08610 10.0kb upstream 10.0kb upstream 10000 false Chr5: 2780295-2790294 Arabidopsis thaliana
AT5G08610 10.0kb downstream 10.0kb downstream 13921 true Chr5: 2790295-2804215 Arabidopsis thaliana
AT5G08610 10.0kb downstream 10.0kb downstream 10000 false Chr5: 2794216-2804215 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365080 5261 Brassicaceae View MSA
123837362 5264 Brassicales-Malvales View MSA
124340705 5266 SBM View MSA
124254646 5268 Malvidae View MSA
124063521 5270 Rosid View MSA
123738215 5271 Pentapetalae View MSA
122794289 5272 Eudicot View MSA
122047115 5273 Angiosperm View MSA
121350061 5274 Embryophyte View MSA
123424072 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.832     High High
cufflinks 2.024       Low
cufflinks 20.191        
cufflinks 3.334        
cufflinks 12.985        
cufflinks 2.935        

0 Strain