Gene : AT5G08480 A. thaliana TAIR10
Defline:  (1 of 32) PF05678 - VQ motif (VQ) Genomic Order:  793
Name:  ? AT5G08480 Secondary Identifier:  ? PAC:19669102
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G08480 0.5kb upstream 0.5kb upstream 1992 true Chr5: 2743120-2745111 Arabidopsis thaliana
AT5G08480 0.5kb upstream 0.5kb upstream 500 false Chr5: 2743120-2743619 Arabidopsis thaliana
AT5G08480 0.5kb downstream 0.5kb downstream 1992 true Chr5: 2743620-2745611 Arabidopsis thaliana
AT5G08480 0.5kb downstream 0.5kb downstream 500 false Chr5: 2745112-2745611 Arabidopsis thaliana
AT5G08480 1.0kb upstream 1.0kb upstream 2492 true Chr5: 2742620-2745111 Arabidopsis thaliana
AT5G08480 1.0kb upstream 1.0kb upstream 1000 false Chr5: 2742620-2743619 Arabidopsis thaliana
AT5G08480 1.0kb downstream 1.0kb downstream 2492 true Chr5: 2743620-2746111 Arabidopsis thaliana
AT5G08480 1.0kb downstream 1.0kb downstream 1000 false Chr5: 2745112-2746111 Arabidopsis thaliana
AT5G08480 2.0kb upstream 2.0kb upstream 3492 true Chr5: 2741620-2745111 Arabidopsis thaliana
AT5G08480 2.0kb upstream 2.0kb upstream 2000 false Chr5: 2741620-2743619 Arabidopsis thaliana
AT5G08480 2.0kb downstream 2.0kb downstream 3492 true Chr5: 2743620-2747111 Arabidopsis thaliana
AT5G08480 2.0kb downstream 2.0kb downstream 2000 false Chr5: 2745112-2747111 Arabidopsis thaliana
AT5G08480 5.0kb upstream 5.0kb upstream 6492 true Chr5: 2738620-2745111 Arabidopsis thaliana
AT5G08480 5.0kb upstream 5.0kb upstream 5000 false Chr5: 2738620-2743619 Arabidopsis thaliana
AT5G08480 5.0kb downstream 5.0kb downstream 6492 true Chr5: 2743620-2750111 Arabidopsis thaliana
AT5G08480 5.0kb downstream 5.0kb downstream 5000 false Chr5: 2745112-2750111 Arabidopsis thaliana
AT5G08480 10.0kb upstream 10.0kb upstream 11492 true Chr5: 2733620-2745111 Arabidopsis thaliana
AT5G08480 10.0kb upstream 10.0kb upstream 10000 false Chr5: 2733620-2743619 Arabidopsis thaliana
AT5G08480 10.0kb downstream 10.0kb downstream 11492 true Chr5: 2743620-2755111 Arabidopsis thaliana
AT5G08480 10.0kb downstream 10.0kb downstream 10000 false Chr5: 2745112-2755111 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366651 5261 Brassicaceae View MSA
123840728 5264 Brassicales-Malvales View MSA
124344207 5266 SBM View MSA
124247497 5268 Malvidae View MSA
124071796 5270 Rosid View MSA
123750842 5271 Pentapetalae View MSA
122795090 5272 Eudicot View MSA
122046673 5273 Angiosperm View MSA
121347985 5274 Embryophyte View MSA
123380701 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.125     Low  
cufflinks 0.142     Low  
cufflinks 0.056     Low Low
cufflinks 0.157     Low  
cufflinks 0.078     Low  
cufflinks 0.258     Low High

0 Strain