Gene : AT5G08230 A. thaliana TAIR10
Defline:  (1 of 2) PTHR12550//PTHR12550:SF49 - HEPATOMA-DERIVED GROWTH FACTOR-RELATED // PROTEIN C06A5.3, ISOFORM B Genomic Order:  762
Name:  ? AT5G08230 Secondary Identifier:  ? PAC:19671012
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G08230 0.5kb upstream 0.5kb upstream 8895 true Chr5: 2641394-2650288 Arabidopsis thaliana
AT5G08230 0.5kb upstream 0.5kb upstream 500 false Chr5: 2649789-2650288 Arabidopsis thaliana
AT5G08230 0.5kb downstream 0.5kb downstream 8895 true Chr5: 2640894-2649788 Arabidopsis thaliana
AT5G08230 0.5kb downstream 0.5kb downstream 500 false Chr5: 2640894-2641393 Arabidopsis thaliana
AT5G08230 1.0kb upstream 1.0kb upstream 9395 true Chr5: 2641394-2650788 Arabidopsis thaliana
AT5G08230 1.0kb upstream 1.0kb upstream 1000 false Chr5: 2649789-2650788 Arabidopsis thaliana
AT5G08230 1.0kb downstream 1.0kb downstream 9395 true Chr5: 2640394-2649788 Arabidopsis thaliana
AT5G08230 1.0kb downstream 1.0kb downstream 1000 false Chr5: 2640394-2641393 Arabidopsis thaliana
AT5G08230 2.0kb upstream 2.0kb upstream 10395 true Chr5: 2641394-2651788 Arabidopsis thaliana
AT5G08230 2.0kb upstream 2.0kb upstream 2000 false Chr5: 2649789-2651788 Arabidopsis thaliana
AT5G08230 2.0kb downstream 2.0kb downstream 10395 true Chr5: 2639394-2649788 Arabidopsis thaliana
AT5G08230 2.0kb downstream 2.0kb downstream 2000 false Chr5: 2639394-2641393 Arabidopsis thaliana
AT5G08230 5.0kb upstream 5.0kb upstream 13395 true Chr5: 2641394-2654788 Arabidopsis thaliana
AT5G08230 5.0kb upstream 5.0kb upstream 5000 false Chr5: 2649789-2654788 Arabidopsis thaliana
AT5G08230 5.0kb downstream 5.0kb downstream 13395 true Chr5: 2636394-2649788 Arabidopsis thaliana
AT5G08230 5.0kb downstream 5.0kb downstream 5000 false Chr5: 2636394-2641393 Arabidopsis thaliana
AT5G08230 10.0kb upstream 10.0kb upstream 18395 true Chr5: 2641394-2659788 Arabidopsis thaliana
AT5G08230 10.0kb upstream 10.0kb upstream 10000 false Chr5: 2649789-2659788 Arabidopsis thaliana
AT5G08230 10.0kb downstream 10.0kb downstream 18395 true Chr5: 2631394-2649788 Arabidopsis thaliana
AT5G08230 10.0kb downstream 10.0kb downstream 10000 false Chr5: 2631394-2641393 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365819 5261 Brassicaceae View MSA
123799041 5264 Brassicales-Malvales View MSA
124296603 5266 SBM View MSA
124250643 5268 Malvidae View MSA
124067114 5270 Rosid View MSA
123746905 5271 Pentapetalae View MSA
122789006 5272 Eudicot View MSA
122042271 5273 Angiosperm View MSA
121348471 5274 Embryophyte View MSA
123424079 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.126        
cufflinks 5.746       High
cufflinks 3.155        
cufflinks 5.726       High
cufflinks 3.2        
cufflinks 4.923        

0 Strain