Gene : AT5G10060 A. thaliana TAIR10
Defline:  (1 of 3) K15559 - regulator of Ty1 transposition protein 103 (RTT103) Genomic Order:  925
Name:  ? AT5G10060 Secondary Identifier:  ? PAC:19672107
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G10060 0.5kb upstream 0.5kb upstream 3131 true Chr5: 3145749-3148879 Arabidopsis thaliana
AT5G10060 0.5kb upstream 0.5kb upstream 500 false Chr5: 3148380-3148879 Arabidopsis thaliana
AT5G10060 0.5kb downstream 0.5kb downstream 3131 true Chr5: 3145249-3148379 Arabidopsis thaliana
AT5G10060 0.5kb downstream 0.5kb downstream 500 false Chr5: 3145249-3145748 Arabidopsis thaliana
AT5G10060 1.0kb upstream 1.0kb upstream 3631 true Chr5: 3145749-3149379 Arabidopsis thaliana
AT5G10060 1.0kb upstream 1.0kb upstream 1000 false Chr5: 3148380-3149379 Arabidopsis thaliana
AT5G10060 1.0kb downstream 1.0kb downstream 3631 true Chr5: 3144749-3148379 Arabidopsis thaliana
AT5G10060 1.0kb downstream 1.0kb downstream 1000 false Chr5: 3144749-3145748 Arabidopsis thaliana
AT5G10060 2.0kb upstream 2.0kb upstream 4631 true Chr5: 3145749-3150379 Arabidopsis thaliana
AT5G10060 2.0kb upstream 2.0kb upstream 2000 false Chr5: 3148380-3150379 Arabidopsis thaliana
AT5G10060 2.0kb downstream 2.0kb downstream 4631 true Chr5: 3143749-3148379 Arabidopsis thaliana
AT5G10060 2.0kb downstream 2.0kb downstream 2000 false Chr5: 3143749-3145748 Arabidopsis thaliana
AT5G10060 5.0kb upstream 5.0kb upstream 7631 true Chr5: 3145749-3153379 Arabidopsis thaliana
AT5G10060 5.0kb upstream 5.0kb upstream 5000 false Chr5: 3148380-3153379 Arabidopsis thaliana
AT5G10060 5.0kb downstream 5.0kb downstream 7631 true Chr5: 3140749-3148379 Arabidopsis thaliana
AT5G10060 5.0kb downstream 5.0kb downstream 5000 false Chr5: 3140749-3145748 Arabidopsis thaliana
AT5G10060 10.0kb upstream 10.0kb upstream 12631 true Chr5: 3145749-3158379 Arabidopsis thaliana
AT5G10060 10.0kb upstream 10.0kb upstream 10000 false Chr5: 3148380-3158379 Arabidopsis thaliana
AT5G10060 10.0kb downstream 10.0kb downstream 12631 true Chr5: 3135749-3148379 Arabidopsis thaliana
AT5G10060 10.0kb downstream 10.0kb downstream 10000 false Chr5: 3135749-3145748 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369692 5261 Brassicaceae View MSA
123840153 5264 Brassicales-Malvales View MSA
124344204 5266 SBM View MSA
124251987 5268 Malvidae View MSA
124070749 5270 Rosid View MSA
123742286 5271 Pentapetalae View MSA
122795416 5272 Eudicot View MSA
122049571 5273 Angiosperm View MSA
123428880 5275 Viridiplantae View MSA
121348039 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.211       Low
cufflinks 24.298        
cufflinks 19.248        
cufflinks 25.528       High
cufflinks 18.404        
cufflinks 21.263        

0 Strain