Gene : PYD2 A. thaliana TAIR10
Primary Identifier:  ? AT5G12200 Defline:  (1 of 1) 3.5.2.2 - Dihydropyrimidinase / Hydantoinase
Genomic Order:  1146 Name:  ? AT5G12200
Secondary Identifier:  ? PAC:19673246
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Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-3982 Arabidopsis thaliana pathologic  
Athaliana PWY-6430 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G12200 0.5kb upstream 0.5kb upstream 3784 true Chr5: 3941528-3945311 Arabidopsis thaliana
AT5G12200 0.5kb upstream 0.5kb upstream 500 false Chr5: 3944812-3945311 Arabidopsis thaliana
AT5G12200 0.5kb downstream 0.5kb downstream 3784 true Chr5: 3941028-3944811 Arabidopsis thaliana
AT5G12200 0.5kb downstream 0.5kb downstream 500 false Chr5: 3941028-3941527 Arabidopsis thaliana
AT5G12200 1.0kb upstream 1.0kb upstream 4284 true Chr5: 3941528-3945811 Arabidopsis thaliana
AT5G12200 1.0kb upstream 1.0kb upstream 1000 false Chr5: 3944812-3945811 Arabidopsis thaliana
AT5G12200 1.0kb downstream 1.0kb downstream 4284 true Chr5: 3940528-3944811 Arabidopsis thaliana
AT5G12200 1.0kb downstream 1.0kb downstream 1000 false Chr5: 3940528-3941527 Arabidopsis thaliana
AT5G12200 2.0kb upstream 2.0kb upstream 5284 true Chr5: 3941528-3946811 Arabidopsis thaliana
AT5G12200 2.0kb upstream 2.0kb upstream 2000 false Chr5: 3944812-3946811 Arabidopsis thaliana
AT5G12200 2.0kb downstream 2.0kb downstream 5284 true Chr5: 3939528-3944811 Arabidopsis thaliana
AT5G12200 2.0kb downstream 2.0kb downstream 2000 false Chr5: 3939528-3941527 Arabidopsis thaliana
AT5G12200 5.0kb upstream 5.0kb upstream 8284 true Chr5: 3941528-3949811 Arabidopsis thaliana
AT5G12200 5.0kb upstream 5.0kb upstream 5000 false Chr5: 3944812-3949811 Arabidopsis thaliana
AT5G12200 5.0kb downstream 5.0kb downstream 8284 true Chr5: 3936528-3944811 Arabidopsis thaliana
AT5G12200 5.0kb downstream 5.0kb downstream 5000 false Chr5: 3936528-3941527 Arabidopsis thaliana
AT5G12200 10.0kb upstream 10.0kb upstream 13284 true Chr5: 3941528-3954811 Arabidopsis thaliana
AT5G12200 10.0kb upstream 10.0kb upstream 10000 false Chr5: 3944812-3954811 Arabidopsis thaliana
AT5G12200 10.0kb downstream 10.0kb downstream 13284 true Chr5: 3931528-3944811 Arabidopsis thaliana
AT5G12200 10.0kb downstream 10.0kb downstream 10000 false Chr5: 3931528-3941527 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369486 5261 Brassicaceae View MSA
123828223 5264 Brassicales-Malvales View MSA
124341067 5266 SBM View MSA
124243285 5268 Malvidae View MSA
124064802 5270 Rosid View MSA
123752945 5271 Pentapetalae View MSA
122786753 5272 Eudicot View MSA
122045027 5273 Angiosperm View MSA
121345970 5274 Embryophyte View MSA
123425044 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.333        
cufflinks 20.786        
cufflinks 13.636       Low
cufflinks 22.727        
cufflinks 15.598        
cufflinks 21.225        

0 Strain