Gene : CYS1 A. thaliana TAIR10
Primary Identifier:  ? AT5G12140 Defline:  (1 of 1) PTHR11413:SF45 - CYSTEINE PROTEINASE INHIBITOR 1
Genomic Order:  1141 Name:  ? AT5G12140
Secondary Identifier:  ? PAC:19667581
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G12140 0.5kb upstream 0.5kb upstream 1615 true Chr5: 3922909-3924523 Arabidopsis thaliana
AT5G12140 0.5kb upstream 0.5kb upstream 500 false Chr5: 3924024-3924523 Arabidopsis thaliana
AT5G12140 0.5kb downstream 0.5kb downstream 1615 true Chr5: 3922409-3924023 Arabidopsis thaliana
AT5G12140 0.5kb downstream 0.5kb downstream 500 false Chr5: 3922409-3922908 Arabidopsis thaliana
AT5G12140 1.0kb upstream 1.0kb upstream 2115 true Chr5: 3922909-3925023 Arabidopsis thaliana
AT5G12140 1.0kb upstream 1.0kb upstream 1000 false Chr5: 3924024-3925023 Arabidopsis thaliana
AT5G12140 1.0kb downstream 1.0kb downstream 2115 true Chr5: 3921909-3924023 Arabidopsis thaliana
AT5G12140 1.0kb downstream 1.0kb downstream 1000 false Chr5: 3921909-3922908 Arabidopsis thaliana
AT5G12140 2.0kb upstream 2.0kb upstream 3115 true Chr5: 3922909-3926023 Arabidopsis thaliana
AT5G12140 2.0kb upstream 2.0kb upstream 2000 false Chr5: 3924024-3926023 Arabidopsis thaliana
AT5G12140 2.0kb downstream 2.0kb downstream 3115 true Chr5: 3920909-3924023 Arabidopsis thaliana
AT5G12140 2.0kb downstream 2.0kb downstream 2000 false Chr5: 3920909-3922908 Arabidopsis thaliana
AT5G12140 5.0kb upstream 5.0kb upstream 6115 true Chr5: 3922909-3929023 Arabidopsis thaliana
AT5G12140 5.0kb upstream 5.0kb upstream 5000 false Chr5: 3924024-3929023 Arabidopsis thaliana
AT5G12140 5.0kb downstream 5.0kb downstream 6115 true Chr5: 3917909-3924023 Arabidopsis thaliana
AT5G12140 5.0kb downstream 5.0kb downstream 5000 false Chr5: 3917909-3922908 Arabidopsis thaliana
AT5G12140 10.0kb upstream 10.0kb upstream 11115 true Chr5: 3922909-3934023 Arabidopsis thaliana
AT5G12140 10.0kb upstream 10.0kb upstream 10000 false Chr5: 3924024-3934023 Arabidopsis thaliana
AT5G12140 10.0kb downstream 10.0kb downstream 11115 true Chr5: 3912909-3924023 Arabidopsis thaliana
AT5G12140 10.0kb downstream 10.0kb downstream 10000 false Chr5: 3912909-3922908 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366127 5261 Brassicaceae View MSA
123838500 5264 Brassicales-Malvales View MSA
124344067 5266 SBM View MSA
124245006 5268 Malvidae View MSA
124064523 5270 Rosid View MSA
123748423 5271 Pentapetalae View MSA
122772609 5272 Eudicot View MSA
122051666 5273 Angiosperm View MSA
121351690 5274 Embryophyte View MSA
123426487 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 122.043     High Low
cufflinks 359.89     High High
cufflinks 148.311     High  
cufflinks 288.251     High  
cufflinks 149.268     High  
cufflinks 263.332     High  

0 Strain