Gene : AT5G11880 A. thaliana TAIR10
Defline:  (1 of 2) 4.1.1.20 - Diaminopimelate decarboxylase / Meso-2,6-diaminoheptanedioate carboxy-lyase Genomic Order:  1114
Name:  ? AT5G11880 Secondary Identifier:  ? PAC:19668377
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5097 Arabidopsis thaliana pathologic  
Athaliana PWY-724 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G11880 0.5kb upstream 0.5kb upstream 2961 true Chr5: 3827526-3830486 Arabidopsis thaliana
AT5G11880 0.5kb upstream 0.5kb upstream 500 false Chr5: 3829987-3830486 Arabidopsis thaliana
AT5G11880 0.5kb downstream 0.5kb downstream 2961 true Chr5: 3827026-3829986 Arabidopsis thaliana
AT5G11880 0.5kb downstream 0.5kb downstream 500 false Chr5: 3827026-3827525 Arabidopsis thaliana
AT5G11880 1.0kb upstream 1.0kb upstream 3461 true Chr5: 3827526-3830986 Arabidopsis thaliana
AT5G11880 1.0kb upstream 1.0kb upstream 1000 false Chr5: 3829987-3830986 Arabidopsis thaliana
AT5G11880 1.0kb downstream 1.0kb downstream 3461 true Chr5: 3826526-3829986 Arabidopsis thaliana
AT5G11880 1.0kb downstream 1.0kb downstream 1000 false Chr5: 3826526-3827525 Arabidopsis thaliana
AT5G11880 2.0kb upstream 2.0kb upstream 4461 true Chr5: 3827526-3831986 Arabidopsis thaliana
AT5G11880 2.0kb upstream 2.0kb upstream 2000 false Chr5: 3829987-3831986 Arabidopsis thaliana
AT5G11880 2.0kb downstream 2.0kb downstream 4461 true Chr5: 3825526-3829986 Arabidopsis thaliana
AT5G11880 2.0kb downstream 2.0kb downstream 2000 false Chr5: 3825526-3827525 Arabidopsis thaliana
AT5G11880 5.0kb upstream 5.0kb upstream 7461 true Chr5: 3827526-3834986 Arabidopsis thaliana
AT5G11880 5.0kb upstream 5.0kb upstream 5000 false Chr5: 3829987-3834986 Arabidopsis thaliana
AT5G11880 5.0kb downstream 5.0kb downstream 7461 true Chr5: 3822526-3829986 Arabidopsis thaliana
AT5G11880 5.0kb downstream 5.0kb downstream 5000 false Chr5: 3822526-3827525 Arabidopsis thaliana
AT5G11880 10.0kb upstream 10.0kb upstream 12461 true Chr5: 3827526-3839986 Arabidopsis thaliana
AT5G11880 10.0kb upstream 10.0kb upstream 10000 false Chr5: 3829987-3839986 Arabidopsis thaliana
AT5G11880 10.0kb downstream 10.0kb downstream 12461 true Chr5: 3817526-3829986 Arabidopsis thaliana
AT5G11880 10.0kb downstream 10.0kb downstream 10000 false Chr5: 3817526-3827525 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377657 5261 Brassicaceae View MSA
123841462 5264 Brassicales-Malvales View MSA
124337243 5266 SBM View MSA
124250091 5268 Malvidae View MSA
124070276 5270 Rosid View MSA
123742733 5271 Pentapetalae View MSA
122796086 5272 Eudicot View MSA
122048449 5273 Angiosperm View MSA
121349416 5274 Embryophyte View MSA
123428095 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 39.116     High  
cufflinks 30.741     High Low
cufflinks 50.226     High High
cufflinks 31.044     High Low
cufflinks 43.747     High  
cufflinks 36.84     High  

0 Strain