Gene : AT5G11412 A. thaliana TAIR10
Defline:  (1 of 234) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Genomic Order:  1065
Name:  ? AT5G11412 Secondary Identifier:  ? PAC:19667391
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G11412 0.5kb upstream 0.5kb upstream 1351 true Chr5: 3640026-3641376 Arabidopsis thaliana
AT5G11412 0.5kb upstream 0.5kb upstream 500 false Chr5: 3640877-3641376 Arabidopsis thaliana
AT5G11412 0.5kb downstream 0.5kb downstream 1351 true Chr5: 3639526-3640876 Arabidopsis thaliana
AT5G11412 0.5kb downstream 0.5kb downstream 500 false Chr5: 3639526-3640025 Arabidopsis thaliana
AT5G11412 1.0kb upstream 1.0kb upstream 1851 true Chr5: 3640026-3641876 Arabidopsis thaliana
AT5G11412 1.0kb upstream 1.0kb upstream 1000 false Chr5: 3640877-3641876 Arabidopsis thaliana
AT5G11412 1.0kb downstream 1.0kb downstream 1851 true Chr5: 3639026-3640876 Arabidopsis thaliana
AT5G11412 1.0kb downstream 1.0kb downstream 1000 false Chr5: 3639026-3640025 Arabidopsis thaliana
AT5G11412 2.0kb upstream 2.0kb upstream 2851 true Chr5: 3640026-3642876 Arabidopsis thaliana
AT5G11412 2.0kb upstream 2.0kb upstream 2000 false Chr5: 3640877-3642876 Arabidopsis thaliana
AT5G11412 2.0kb downstream 2.0kb downstream 2851 true Chr5: 3638026-3640876 Arabidopsis thaliana
AT5G11412 2.0kb downstream 2.0kb downstream 2000 false Chr5: 3638026-3640025 Arabidopsis thaliana
AT5G11412 5.0kb upstream 5.0kb upstream 5851 true Chr5: 3640026-3645876 Arabidopsis thaliana
AT5G11412 5.0kb upstream 5.0kb upstream 5000 false Chr5: 3640877-3645876 Arabidopsis thaliana
AT5G11412 5.0kb downstream 5.0kb downstream 5851 true Chr5: 3635026-3640876 Arabidopsis thaliana
AT5G11412 5.0kb downstream 5.0kb downstream 5000 false Chr5: 3635026-3640025 Arabidopsis thaliana
AT5G11412 10.0kb upstream 10.0kb upstream 10851 true Chr5: 3640026-3650876 Arabidopsis thaliana
AT5G11412 10.0kb upstream 10.0kb upstream 10000 false Chr5: 3640877-3650876 Arabidopsis thaliana
AT5G11412 10.0kb downstream 10.0kb downstream 10851 true Chr5: 3630026-3640876 Arabidopsis thaliana
AT5G11412 10.0kb downstream 10.0kb downstream 10000 false Chr5: 3630026-3640025 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122331050 5261 Brassicaceae Singleton cluster - no MSA
123772260 5264 Brassicales-Malvales Singleton cluster - no MSA
124270780 5266 SBM Singleton cluster - no MSA
124126830 5268 Malvidae Singleton cluster - no MSA
123855717 5270 Rosid Singleton cluster - no MSA
123441683 5271 Pentapetalae Singleton cluster - no MSA
122477266 5272 Eudicot Singleton cluster - no MSA
122051373 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349952 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.049     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.039     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.056     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain