Gene : SMT1 A. thaliana TAIR10
Primary Identifier:  ? AT5G13710 Defline:  (1 of 1) K00559 - sterol 24-C-methyltransferase (E2.1.1.41, SMT1, ERG6)
Genomic Order:  1264 Name:  ? AT5G13710
Secondary Identifier:  ? PAC:19667623
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-2541 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G13710 0.5kb upstream 0.5kb upstream 3864 true Chr5: 4423695-4427558 Arabidopsis thaliana
AT5G13710 0.5kb upstream 0.5kb upstream 500 false Chr5: 4427059-4427558 Arabidopsis thaliana
AT5G13710 0.5kb downstream 0.5kb downstream 3864 true Chr5: 4423195-4427058 Arabidopsis thaliana
AT5G13710 0.5kb downstream 0.5kb downstream 500 false Chr5: 4423195-4423694 Arabidopsis thaliana
AT5G13710 1.0kb upstream 1.0kb upstream 4364 true Chr5: 4423695-4428058 Arabidopsis thaliana
AT5G13710 1.0kb upstream 1.0kb upstream 1000 false Chr5: 4427059-4428058 Arabidopsis thaliana
AT5G13710 1.0kb downstream 1.0kb downstream 4364 true Chr5: 4422695-4427058 Arabidopsis thaliana
AT5G13710 1.0kb downstream 1.0kb downstream 1000 false Chr5: 4422695-4423694 Arabidopsis thaliana
AT5G13710 2.0kb upstream 2.0kb upstream 5364 true Chr5: 4423695-4429058 Arabidopsis thaliana
AT5G13710 2.0kb upstream 2.0kb upstream 2000 false Chr5: 4427059-4429058 Arabidopsis thaliana
AT5G13710 2.0kb downstream 2.0kb downstream 5364 true Chr5: 4421695-4427058 Arabidopsis thaliana
AT5G13710 2.0kb downstream 2.0kb downstream 2000 false Chr5: 4421695-4423694 Arabidopsis thaliana
AT5G13710 5.0kb upstream 5.0kb upstream 8364 true Chr5: 4423695-4432058 Arabidopsis thaliana
AT5G13710 5.0kb upstream 5.0kb upstream 5000 false Chr5: 4427059-4432058 Arabidopsis thaliana
AT5G13710 5.0kb downstream 5.0kb downstream 8364 true Chr5: 4418695-4427058 Arabidopsis thaliana
AT5G13710 5.0kb downstream 5.0kb downstream 5000 false Chr5: 4418695-4423694 Arabidopsis thaliana
AT5G13710 10.0kb upstream 10.0kb upstream 13364 true Chr5: 4423695-4437058 Arabidopsis thaliana
AT5G13710 10.0kb upstream 10.0kb upstream 10000 false Chr5: 4427059-4437058 Arabidopsis thaliana
AT5G13710 10.0kb downstream 10.0kb downstream 13364 true Chr5: 4413695-4427058 Arabidopsis thaliana
AT5G13710 10.0kb downstream 10.0kb downstream 10000 false Chr5: 4413695-4423694 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041479 5273 Angiosperm View MSA
122372640 5261 Brassicaceae View MSA
123827735 5264 Brassicales-Malvales View MSA
124350111 5266 SBM View MSA
124248608 5268 Malvidae View MSA
124073694 5270 Rosid View MSA
123743908 5271 Pentapetalae View MSA
122793455 5272 Eudicot View MSA
121345470 5274 Embryophyte View MSA
123426805 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.561        
cufflinks 30.894     High  
cufflinks 13.641        
cufflinks 31.45     High  
cufflinks 10.204       Low
cufflinks 28.009        

0 Strain