Gene : AT5G13430 A. thaliana TAIR10
Defline:  (1 of 2) K00411 - ubiquinol-cytochrome c reductase iron-sulfur subunit (UQCRFS1, RIP1, petA) Genomic Order:  1237
Name:  ? AT5G13430 Secondary Identifier:  ? PAC:19667534
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Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-3781 Arabidopsis thaliana pathologic  
Athaliana PWY-7279 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G13430 0.5kb upstream 0.5kb upstream 2889 true Chr5: 4305125-4308013 Arabidopsis thaliana
AT5G13430 0.5kb upstream 0.5kb upstream 500 false Chr5: 4307514-4308013 Arabidopsis thaliana
AT5G13430 0.5kb downstream 0.5kb downstream 2889 true Chr5: 4304625-4307513 Arabidopsis thaliana
AT5G13430 0.5kb downstream 0.5kb downstream 500 false Chr5: 4304625-4305124 Arabidopsis thaliana
AT5G13430 1.0kb upstream 1.0kb upstream 3389 true Chr5: 4305125-4308513 Arabidopsis thaliana
AT5G13430 1.0kb upstream 1.0kb upstream 1000 false Chr5: 4307514-4308513 Arabidopsis thaliana
AT5G13430 1.0kb downstream 1.0kb downstream 3389 true Chr5: 4304125-4307513 Arabidopsis thaliana
AT5G13430 1.0kb downstream 1.0kb downstream 1000 false Chr5: 4304125-4305124 Arabidopsis thaliana
AT5G13430 2.0kb upstream 2.0kb upstream 4389 true Chr5: 4305125-4309513 Arabidopsis thaliana
AT5G13430 2.0kb upstream 2.0kb upstream 2000 false Chr5: 4307514-4309513 Arabidopsis thaliana
AT5G13430 2.0kb downstream 2.0kb downstream 4389 true Chr5: 4303125-4307513 Arabidopsis thaliana
AT5G13430 2.0kb downstream 2.0kb downstream 2000 false Chr5: 4303125-4305124 Arabidopsis thaliana
AT5G13430 5.0kb upstream 5.0kb upstream 7389 true Chr5: 4305125-4312513 Arabidopsis thaliana
AT5G13430 5.0kb upstream 5.0kb upstream 5000 false Chr5: 4307514-4312513 Arabidopsis thaliana
AT5G13430 5.0kb downstream 5.0kb downstream 7389 true Chr5: 4300125-4307513 Arabidopsis thaliana
AT5G13430 5.0kb downstream 5.0kb downstream 5000 false Chr5: 4300125-4305124 Arabidopsis thaliana
AT5G13430 10.0kb upstream 10.0kb upstream 12389 true Chr5: 4305125-4317513 Arabidopsis thaliana
AT5G13430 10.0kb upstream 10.0kb upstream 10000 false Chr5: 4307514-4317513 Arabidopsis thaliana
AT5G13430 10.0kb downstream 10.0kb downstream 12389 true Chr5: 4295125-4307513 Arabidopsis thaliana
AT5G13430 10.0kb downstream 10.0kb downstream 10000 false Chr5: 4295125-4305124 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122332076 5261 Brassicaceae View MSA
123773188 5264 Brassicales-Malvales View MSA
124271685 5266 SBM View MSA
124250960 5268 Malvidae View MSA
124070196 5270 Rosid View MSA
123743313 5271 Pentapetalae View MSA
122789519 5272 Eudicot View MSA
122049860 5273 Angiosperm View MSA
121345913 5274 Embryophyte View MSA
123424462 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.767       Low
cufflinks 45.607     High  
cufflinks 32.243     High  
cufflinks 44.454     High  
cufflinks 32.499     High  
cufflinks 50.053     High High

0 Strain