Gene : Rap2.6L A. thaliana TAIR10
Primary Identifier:  ? AT5G13330 Defline:  (1 of 141) PF00847 - AP2 domain (AP2)
Genomic Order:  1227 Name:  ? AT5G13330
Secondary Identifier:  ? PAC:19673199
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G13330 0.5kb upstream 0.5kb upstream 3101 true Chr5: 4271560-4274660 Arabidopsis thaliana
AT5G13330 0.5kb upstream 0.5kb upstream 500 false Chr5: 4271560-4272059 Arabidopsis thaliana
AT5G13330 0.5kb downstream 0.5kb downstream 3101 true Chr5: 4272060-4275160 Arabidopsis thaliana
AT5G13330 0.5kb downstream 0.5kb downstream 500 false Chr5: 4274661-4275160 Arabidopsis thaliana
AT5G13330 1.0kb upstream 1.0kb upstream 3601 true Chr5: 4271060-4274660 Arabidopsis thaliana
AT5G13330 1.0kb upstream 1.0kb upstream 1000 false Chr5: 4271060-4272059 Arabidopsis thaliana
AT5G13330 1.0kb downstream 1.0kb downstream 3601 true Chr5: 4272060-4275660 Arabidopsis thaliana
AT5G13330 1.0kb downstream 1.0kb downstream 1000 false Chr5: 4274661-4275660 Arabidopsis thaliana
AT5G13330 2.0kb upstream 2.0kb upstream 4601 true Chr5: 4270060-4274660 Arabidopsis thaliana
AT5G13330 2.0kb upstream 2.0kb upstream 2000 false Chr5: 4270060-4272059 Arabidopsis thaliana
AT5G13330 2.0kb downstream 2.0kb downstream 4601 true Chr5: 4272060-4276660 Arabidopsis thaliana
AT5G13330 2.0kb downstream 2.0kb downstream 2000 false Chr5: 4274661-4276660 Arabidopsis thaliana
AT5G13330 5.0kb upstream 5.0kb upstream 7601 true Chr5: 4267060-4274660 Arabidopsis thaliana
AT5G13330 5.0kb upstream 5.0kb upstream 5000 false Chr5: 4267060-4272059 Arabidopsis thaliana
AT5G13330 5.0kb downstream 5.0kb downstream 7601 true Chr5: 4272060-4279660 Arabidopsis thaliana
AT5G13330 5.0kb downstream 5.0kb downstream 5000 false Chr5: 4274661-4279660 Arabidopsis thaliana
AT5G13330 10.0kb upstream 10.0kb upstream 12601 true Chr5: 4262060-4274660 Arabidopsis thaliana
AT5G13330 10.0kb upstream 10.0kb upstream 10000 false Chr5: 4262060-4272059 Arabidopsis thaliana
AT5G13330 10.0kb downstream 10.0kb downstream 12601 true Chr5: 4272060-4284660 Arabidopsis thaliana
AT5G13330 10.0kb downstream 10.0kb downstream 10000 false Chr5: 4274661-4284660 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369204 5261 Brassicaceae View MSA
123840289 5264 Brassicales-Malvales View MSA
124350133 5266 SBM View MSA
124250788 5268 Malvidae View MSA
124066336 5270 Rosid View MSA
123738073 5271 Pentapetalae View MSA
122789741 5272 Eudicot View MSA
122050930 5273 Angiosperm View MSA
123428898 5275 Viridiplantae View MSA
121351000 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.779        
cufflinks 0.675        
cufflinks 1.531        
cufflinks 3.261       High
cufflinks 2.664       High
cufflinks 0.552       Low

0 Strain