Gene : AT5G13310 A. thaliana TAIR10
Defline:  (1 of 2) PTHR13445:SF3 - PROTEIN TSSC4 Genomic Order:  1225
Name:  ? AT5G13310 Secondary Identifier:  ? PAC:19671611
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G13310 0.5kb upstream 0.5kb upstream 2345 true Chr5: 4262993-4265337 Arabidopsis thaliana
AT5G13310 0.5kb upstream 0.5kb upstream 500 false Chr5: 4262993-4263492 Arabidopsis thaliana
AT5G13310 0.5kb downstream 0.5kb downstream 2345 true Chr5: 4263493-4265837 Arabidopsis thaliana
AT5G13310 0.5kb downstream 0.5kb downstream 500 false Chr5: 4265338-4265837 Arabidopsis thaliana
AT5G13310 1.0kb upstream 1.0kb upstream 2845 true Chr5: 4262493-4265337 Arabidopsis thaliana
AT5G13310 1.0kb upstream 1.0kb upstream 1000 false Chr5: 4262493-4263492 Arabidopsis thaliana
AT5G13310 1.0kb downstream 1.0kb downstream 2845 true Chr5: 4263493-4266337 Arabidopsis thaliana
AT5G13310 1.0kb downstream 1.0kb downstream 1000 false Chr5: 4265338-4266337 Arabidopsis thaliana
AT5G13310 2.0kb upstream 2.0kb upstream 3845 true Chr5: 4261493-4265337 Arabidopsis thaliana
AT5G13310 2.0kb upstream 2.0kb upstream 2000 false Chr5: 4261493-4263492 Arabidopsis thaliana
AT5G13310 2.0kb downstream 2.0kb downstream 3845 true Chr5: 4263493-4267337 Arabidopsis thaliana
AT5G13310 2.0kb downstream 2.0kb downstream 2000 false Chr5: 4265338-4267337 Arabidopsis thaliana
AT5G13310 5.0kb upstream 5.0kb upstream 6845 true Chr5: 4258493-4265337 Arabidopsis thaliana
AT5G13310 5.0kb upstream 5.0kb upstream 5000 false Chr5: 4258493-4263492 Arabidopsis thaliana
AT5G13310 5.0kb downstream 5.0kb downstream 6845 true Chr5: 4263493-4270337 Arabidopsis thaliana
AT5G13310 5.0kb downstream 5.0kb downstream 5000 false Chr5: 4265338-4270337 Arabidopsis thaliana
AT5G13310 10.0kb upstream 10.0kb upstream 11845 true Chr5: 4253493-4265337 Arabidopsis thaliana
AT5G13310 10.0kb upstream 10.0kb upstream 10000 false Chr5: 4253493-4263492 Arabidopsis thaliana
AT5G13310 10.0kb downstream 10.0kb downstream 11845 true Chr5: 4263493-4275337 Arabidopsis thaliana
AT5G13310 10.0kb downstream 10.0kb downstream 10000 false Chr5: 4265338-4275337 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041303 5273 Angiosperm View MSA
122370526 5261 Brassicaceae View MSA
123833322 5264 Brassicales-Malvales View MSA
124342915 5266 SBM View MSA
124238822 5268 Malvidae View MSA
124072722 5270 Rosid View MSA
123741101 5271 Pentapetalae View MSA
122794619 5272 Eudicot View MSA
121348542 5274 Embryophyte View MSA
123426495 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.48        
cufflinks 7.265        
cufflinks 4.143       Low
cufflinks 8.258       High
cufflinks 4.891        
cufflinks 7.954        

0 Strain