Gene : JAZ10 A. thaliana TAIR10
Primary Identifier:  ? AT5G13220 Defline:  (1 of 1) PTHR33077:SF6 - PROTEIN TIFY 9
Genomic Order:  1216 Name:  ? AT5G13220
Secondary Identifier:  ? PAC:19669222
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Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G13220 0.5kb upstream 0.5kb upstream 2496 true Chr5: 4218388-4220883 Arabidopsis thaliana
AT5G13220 0.5kb upstream 0.5kb upstream 500 false Chr5: 4218388-4218887 Arabidopsis thaliana
AT5G13220 0.5kb downstream 0.5kb downstream 2496 true Chr5: 4218888-4221383 Arabidopsis thaliana
AT5G13220 0.5kb downstream 0.5kb downstream 500 false Chr5: 4220884-4221383 Arabidopsis thaliana
AT5G13220 1.0kb upstream 1.0kb upstream 2996 true Chr5: 4217888-4220883 Arabidopsis thaliana
AT5G13220 1.0kb upstream 1.0kb upstream 1000 false Chr5: 4217888-4218887 Arabidopsis thaliana
AT5G13220 1.0kb downstream 1.0kb downstream 2996 true Chr5: 4218888-4221883 Arabidopsis thaliana
AT5G13220 1.0kb downstream 1.0kb downstream 1000 false Chr5: 4220884-4221883 Arabidopsis thaliana
AT5G13220 2.0kb upstream 2.0kb upstream 3996 true Chr5: 4216888-4220883 Arabidopsis thaliana
AT5G13220 2.0kb upstream 2.0kb upstream 2000 false Chr5: 4216888-4218887 Arabidopsis thaliana
AT5G13220 2.0kb downstream 2.0kb downstream 3996 true Chr5: 4218888-4222883 Arabidopsis thaliana
AT5G13220 2.0kb downstream 2.0kb downstream 2000 false Chr5: 4220884-4222883 Arabidopsis thaliana
AT5G13220 5.0kb upstream 5.0kb upstream 6996 true Chr5: 4213888-4220883 Arabidopsis thaliana
AT5G13220 5.0kb upstream 5.0kb upstream 5000 false Chr5: 4213888-4218887 Arabidopsis thaliana
AT5G13220 5.0kb downstream 5.0kb downstream 6996 true Chr5: 4218888-4225883 Arabidopsis thaliana
AT5G13220 5.0kb downstream 5.0kb downstream 5000 false Chr5: 4220884-4225883 Arabidopsis thaliana
AT5G13220 10.0kb upstream 10.0kb upstream 11996 true Chr5: 4208888-4220883 Arabidopsis thaliana
AT5G13220 10.0kb upstream 10.0kb upstream 10000 false Chr5: 4208888-4218887 Arabidopsis thaliana
AT5G13220 10.0kb downstream 10.0kb downstream 11996 true Chr5: 4218888-4230883 Arabidopsis thaliana
AT5G13220 10.0kb downstream 10.0kb downstream 10000 false Chr5: 4220884-4230883 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363823 5261 Brassicaceae View MSA
123840955 5264 Brassicales-Malvales View MSA
124339805 5266 SBM View MSA
124242415 5268 Malvidae View MSA
124071926 5270 Rosid View MSA
123747835 5271 Pentapetalae View MSA
122797679 5272 Eudicot View MSA
122046349 5273 Angiosperm View MSA
121349662 5274 Embryophyte View MSA
123381390 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.417       Low
cufflinks 19.248        
cufflinks 8.056        
cufflinks 23.962        
cufflinks 6.274        
cufflinks 18.565        

0 Strain