Gene : AT5G12850 A. thaliana TAIR10
Defline:  (1 of 1) PTHR14493//PTHR14493:SF47 - UNCHARACTERIZED // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 Genomic Order:  1179
Name:  ? AT5G12850 Secondary Identifier:  ? PAC:19667958
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G12850 0.5kb upstream 0.5kb upstream 3894 true Chr5: 4055687-4059580 Arabidopsis thaliana
AT5G12850 0.5kb upstream 0.5kb upstream 500 false Chr5: 4055687-4056186 Arabidopsis thaliana
AT5G12850 0.5kb downstream 0.5kb downstream 3894 true Chr5: 4056187-4060080 Arabidopsis thaliana
AT5G12850 0.5kb downstream 0.5kb downstream 500 false Chr5: 4059581-4060080 Arabidopsis thaliana
AT5G12850 1.0kb upstream 1.0kb upstream 4394 true Chr5: 4055187-4059580 Arabidopsis thaliana
AT5G12850 1.0kb upstream 1.0kb upstream 1000 false Chr5: 4055187-4056186 Arabidopsis thaliana
AT5G12850 1.0kb downstream 1.0kb downstream 4394 true Chr5: 4056187-4060580 Arabidopsis thaliana
AT5G12850 1.0kb downstream 1.0kb downstream 1000 false Chr5: 4059581-4060580 Arabidopsis thaliana
AT5G12850 2.0kb upstream 2.0kb upstream 5394 true Chr5: 4054187-4059580 Arabidopsis thaliana
AT5G12850 2.0kb upstream 2.0kb upstream 2000 false Chr5: 4054187-4056186 Arabidopsis thaliana
AT5G12850 2.0kb downstream 2.0kb downstream 5394 true Chr5: 4056187-4061580 Arabidopsis thaliana
AT5G12850 2.0kb downstream 2.0kb downstream 2000 false Chr5: 4059581-4061580 Arabidopsis thaliana
AT5G12850 5.0kb upstream 5.0kb upstream 8394 true Chr5: 4051187-4059580 Arabidopsis thaliana
AT5G12850 5.0kb upstream 5.0kb upstream 5000 false Chr5: 4051187-4056186 Arabidopsis thaliana
AT5G12850 5.0kb downstream 5.0kb downstream 8394 true Chr5: 4056187-4064580 Arabidopsis thaliana
AT5G12850 5.0kb downstream 5.0kb downstream 5000 false Chr5: 4059581-4064580 Arabidopsis thaliana
AT5G12850 10.0kb upstream 10.0kb upstream 13394 true Chr5: 4046187-4059580 Arabidopsis thaliana
AT5G12850 10.0kb upstream 10.0kb upstream 10000 false Chr5: 4046187-4056186 Arabidopsis thaliana
AT5G12850 10.0kb downstream 10.0kb downstream 13394 true Chr5: 4056187-4069580 Arabidopsis thaliana
AT5G12850 10.0kb downstream 10.0kb downstream 10000 false Chr5: 4059581-4069580 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027558 5273 Angiosperm View MSA
122372240 5261 Brassicaceae View MSA
123800324 5264 Brassicales-Malvales View MSA
124297748 5266 SBM View MSA
124149560 5268 Malvidae View MSA
123875346 5270 Rosid View MSA
123750117 5271 Pentapetalae View MSA
122773480 5272 Eudicot View MSA
123429052 5275 Viridiplantae View MSA
121351105 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.519        
cufflinks 17.364        
cufflinks 11.636        
cufflinks 19.59        
cufflinks 11.405       Low
cufflinks 20.347       High

0 Strain