Gene : SPX4 A. thaliana TAIR10
Primary Identifier:  ? AT5G15330 Defline:  (1 of 1) PTHR10783:SF3 - VACUOLAR TRANSPORTER CHAPERONE 4
Genomic Order:  1431 Name:  ? AT5G15330
Secondary Identifier:  ? PAC:19670101
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G15330 0.5kb upstream 0.5kb upstream 2244 true Chr5: 4979988-4982231 Arabidopsis thaliana
AT5G15330 0.5kb upstream 0.5kb upstream 500 false Chr5: 4979988-4980487 Arabidopsis thaliana
AT5G15330 0.5kb downstream 0.5kb downstream 2244 true Chr5: 4980488-4982731 Arabidopsis thaliana
AT5G15330 0.5kb downstream 0.5kb downstream 500 false Chr5: 4982232-4982731 Arabidopsis thaliana
AT5G15330 1.0kb upstream 1.0kb upstream 2744 true Chr5: 4979488-4982231 Arabidopsis thaliana
AT5G15330 1.0kb upstream 1.0kb upstream 1000 false Chr5: 4979488-4980487 Arabidopsis thaliana
AT5G15330 1.0kb downstream 1.0kb downstream 2744 true Chr5: 4980488-4983231 Arabidopsis thaliana
AT5G15330 1.0kb downstream 1.0kb downstream 1000 false Chr5: 4982232-4983231 Arabidopsis thaliana
AT5G15330 2.0kb upstream 2.0kb upstream 3744 true Chr5: 4978488-4982231 Arabidopsis thaliana
AT5G15330 2.0kb upstream 2.0kb upstream 2000 false Chr5: 4978488-4980487 Arabidopsis thaliana
AT5G15330 2.0kb downstream 2.0kb downstream 3744 true Chr5: 4980488-4984231 Arabidopsis thaliana
AT5G15330 2.0kb downstream 2.0kb downstream 2000 false Chr5: 4982232-4984231 Arabidopsis thaliana
AT5G15330 5.0kb upstream 5.0kb upstream 6744 true Chr5: 4975488-4982231 Arabidopsis thaliana
AT5G15330 5.0kb upstream 5.0kb upstream 5000 false Chr5: 4975488-4980487 Arabidopsis thaliana
AT5G15330 5.0kb downstream 5.0kb downstream 6744 true Chr5: 4980488-4987231 Arabidopsis thaliana
AT5G15330 5.0kb downstream 5.0kb downstream 5000 false Chr5: 4982232-4987231 Arabidopsis thaliana
AT5G15330 10.0kb upstream 10.0kb upstream 11744 true Chr5: 4970488-4982231 Arabidopsis thaliana
AT5G15330 10.0kb upstream 10.0kb upstream 10000 false Chr5: 4970488-4980487 Arabidopsis thaliana
AT5G15330 10.0kb downstream 10.0kb downstream 11744 true Chr5: 4980488-4992231 Arabidopsis thaliana
AT5G15330 10.0kb downstream 10.0kb downstream 10000 false Chr5: 4982232-4992231 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041268 5273 Angiosperm View MSA
122365116 5261 Brassicaceae View MSA
123831992 5264 Brassicales-Malvales View MSA
124339561 5266 SBM View MSA
124239265 5268 Malvidae View MSA
124068235 5270 Rosid View MSA
123744824 5271 Pentapetalae View MSA
122771260 5272 Eudicot View MSA
121351061 5274 Embryophyte View MSA
123427814 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.736       Low
cufflinks 8.349        
cufflinks 6.134        
cufflinks 9.777       High
cufflinks 6.099        
cufflinks 5.849        

0 Strain