Gene : AT5G14590 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11822:SF5 - ISOCITRATE DEHYDROGENASE [NADP], CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  1356
Name:  ? AT5G14590 Secondary Identifier:  ? PAC:19668890
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-6549 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G14590 0.5kb upstream 0.5kb upstream 3941 true Chr5: 4703298-4707238 Arabidopsis thaliana
AT5G14590 0.5kb upstream 0.5kb upstream 500 false Chr5: 4706739-4707238 Arabidopsis thaliana
AT5G14590 0.5kb downstream 0.5kb downstream 3941 true Chr5: 4702798-4706738 Arabidopsis thaliana
AT5G14590 0.5kb downstream 0.5kb downstream 500 false Chr5: 4702798-4703297 Arabidopsis thaliana
AT5G14590 1.0kb upstream 1.0kb upstream 4441 true Chr5: 4703298-4707738 Arabidopsis thaliana
AT5G14590 1.0kb upstream 1.0kb upstream 1000 false Chr5: 4706739-4707738 Arabidopsis thaliana
AT5G14590 1.0kb downstream 1.0kb downstream 4441 true Chr5: 4702298-4706738 Arabidopsis thaliana
AT5G14590 1.0kb downstream 1.0kb downstream 1000 false Chr5: 4702298-4703297 Arabidopsis thaliana
AT5G14590 2.0kb upstream 2.0kb upstream 5441 true Chr5: 4703298-4708738 Arabidopsis thaliana
AT5G14590 2.0kb upstream 2.0kb upstream 2000 false Chr5: 4706739-4708738 Arabidopsis thaliana
AT5G14590 2.0kb downstream 2.0kb downstream 5441 true Chr5: 4701298-4706738 Arabidopsis thaliana
AT5G14590 2.0kb downstream 2.0kb downstream 2000 false Chr5: 4701298-4703297 Arabidopsis thaliana
AT5G14590 5.0kb upstream 5.0kb upstream 8441 true Chr5: 4703298-4711738 Arabidopsis thaliana
AT5G14590 5.0kb upstream 5.0kb upstream 5000 false Chr5: 4706739-4711738 Arabidopsis thaliana
AT5G14590 5.0kb downstream 5.0kb downstream 8441 true Chr5: 4698298-4706738 Arabidopsis thaliana
AT5G14590 5.0kb downstream 5.0kb downstream 5000 false Chr5: 4698298-4703297 Arabidopsis thaliana
AT5G14590 10.0kb upstream 10.0kb upstream 13441 true Chr5: 4703298-4716738 Arabidopsis thaliana
AT5G14590 10.0kb upstream 10.0kb upstream 10000 false Chr5: 4706739-4716738 Arabidopsis thaliana
AT5G14590 10.0kb downstream 10.0kb downstream 13441 true Chr5: 4693298-4706738 Arabidopsis thaliana
AT5G14590 10.0kb downstream 10.0kb downstream 10000 false Chr5: 4693298-4703297 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041513 5273 Angiosperm View MSA
122367342 5261 Brassicaceae View MSA
123829128 5264 Brassicales-Malvales View MSA
124338965 5266 SBM View MSA
124253580 5268 Malvidae View MSA
124066348 5270 Rosid View MSA
123740516 5271 Pentapetalae View MSA
122791819 5272 Eudicot View MSA
121349846 5274 Embryophyte View MSA
123426624 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.617        
cufflinks 17.499        
cufflinks 21.419       High
cufflinks 18.264        
cufflinks 22.525       High
cufflinks 18.161        

0 Strain