Gene : AT5G17280 A. thaliana TAIR10
Defline:  (1 of 1) PTHR21193:SF3 - OXIDOREDUCTASE-LIKE DOMAIN-CONTAINING PROTEIN 1 Genomic Order:  1638
Name:  ? AT5G17280 Secondary Identifier:  ? PAC:19669442
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G17280 0.5kb upstream 0.5kb upstream 1097 true Chr5: 5685799-5686895 Arabidopsis thaliana
AT5G17280 0.5kb upstream 0.5kb upstream 500 false Chr5: 5685799-5686298 Arabidopsis thaliana
AT5G17280 0.5kb downstream 0.5kb downstream 1097 true Chr5: 5686299-5687395 Arabidopsis thaliana
AT5G17280 0.5kb downstream 0.5kb downstream 500 false Chr5: 5686896-5687395 Arabidopsis thaliana
AT5G17280 1.0kb upstream 1.0kb upstream 1597 true Chr5: 5685299-5686895 Arabidopsis thaliana
AT5G17280 1.0kb upstream 1.0kb upstream 1000 false Chr5: 5685299-5686298 Arabidopsis thaliana
AT5G17280 1.0kb downstream 1.0kb downstream 1597 true Chr5: 5686299-5687895 Arabidopsis thaliana
AT5G17280 1.0kb downstream 1.0kb downstream 1000 false Chr5: 5686896-5687895 Arabidopsis thaliana
AT5G17280 2.0kb upstream 2.0kb upstream 2597 true Chr5: 5684299-5686895 Arabidopsis thaliana
AT5G17280 2.0kb upstream 2.0kb upstream 2000 false Chr5: 5684299-5686298 Arabidopsis thaliana
AT5G17280 2.0kb downstream 2.0kb downstream 2597 true Chr5: 5686299-5688895 Arabidopsis thaliana
AT5G17280 2.0kb downstream 2.0kb downstream 2000 false Chr5: 5686896-5688895 Arabidopsis thaliana
AT5G17280 5.0kb upstream 5.0kb upstream 5597 true Chr5: 5681299-5686895 Arabidopsis thaliana
AT5G17280 5.0kb upstream 5.0kb upstream 5000 false Chr5: 5681299-5686298 Arabidopsis thaliana
AT5G17280 5.0kb downstream 5.0kb downstream 5597 true Chr5: 5686299-5691895 Arabidopsis thaliana
AT5G17280 5.0kb downstream 5.0kb downstream 5000 false Chr5: 5686896-5691895 Arabidopsis thaliana
AT5G17280 10.0kb upstream 10.0kb upstream 10597 true Chr5: 5676299-5686895 Arabidopsis thaliana
AT5G17280 10.0kb upstream 10.0kb upstream 10000 false Chr5: 5676299-5686298 Arabidopsis thaliana
AT5G17280 10.0kb downstream 10.0kb downstream 10597 true Chr5: 5686299-5696895 Arabidopsis thaliana
AT5G17280 10.0kb downstream 10.0kb downstream 10000 false Chr5: 5686896-5696895 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362083 5261 Brassicaceae View MSA
123841103 5264 Brassicales-Malvales View MSA
124344871 5266 SBM View MSA
124245431 5268 Malvidae View MSA
124039019 5270 Rosid View MSA
123746716 5271 Pentapetalae View MSA
122797705 5272 Eudicot View MSA
122049661 5273 Angiosperm View MSA
121311527 5274 Embryophyte View MSA
123348812 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 40.708     High High
cufflinks 15.139       Low
cufflinks 35.851     High  
cufflinks 17.731        
cufflinks 39.874     High  
cufflinks 15.51        

0 Strain