Gene : CAC1 A. thaliana TAIR10
Primary Identifier:  ? AT5G16390 Defline:  (1 of 1) PTHR23151//PTHR23151:SF66 - DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED // BIOTIN CARBOXYL CARRIER PROTEIN OF ACETYL-COA CARBOXYLASE 1, CHLOROPLASTIC
Genomic Order:  1542 Name:  ? AT5G16390
Secondary Identifier:  ? PAC:19668164
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4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY0-1264 Arabidopsis thaliana pathologic  
Athaliana PWY-4381 Arabidopsis thaliana pathologic  
Athaliana PWY-5156 Arabidopsis thaliana pathologic  
Athaliana PWY-7388 Arabidopsis thaliana pathologic  

Genomics

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Expression

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6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G16390 0.5kb upstream 0.5kb upstream 2826 true Chr5: 5360801-5363626 Arabidopsis thaliana
AT5G16390 0.5kb upstream 0.5kb upstream 500 false Chr5: 5363127-5363626 Arabidopsis thaliana
AT5G16390 0.5kb downstream 0.5kb downstream 2826 true Chr5: 5360301-5363126 Arabidopsis thaliana
AT5G16390 0.5kb downstream 0.5kb downstream 500 false Chr5: 5360301-5360800 Arabidopsis thaliana
AT5G16390 1.0kb upstream 1.0kb upstream 3326 true Chr5: 5360801-5364126 Arabidopsis thaliana
AT5G16390 1.0kb upstream 1.0kb upstream 1000 false Chr5: 5363127-5364126 Arabidopsis thaliana
AT5G16390 1.0kb downstream 1.0kb downstream 3326 true Chr5: 5359801-5363126 Arabidopsis thaliana
AT5G16390 1.0kb downstream 1.0kb downstream 1000 false Chr5: 5359801-5360800 Arabidopsis thaliana
AT5G16390 2.0kb upstream 2.0kb upstream 4326 true Chr5: 5360801-5365126 Arabidopsis thaliana
AT5G16390 2.0kb upstream 2.0kb upstream 2000 false Chr5: 5363127-5365126 Arabidopsis thaliana
AT5G16390 2.0kb downstream 2.0kb downstream 4326 true Chr5: 5358801-5363126 Arabidopsis thaliana
AT5G16390 2.0kb downstream 2.0kb downstream 2000 false Chr5: 5358801-5360800 Arabidopsis thaliana
AT5G16390 5.0kb upstream 5.0kb upstream 7326 true Chr5: 5360801-5368126 Arabidopsis thaliana
AT5G16390 5.0kb upstream 5.0kb upstream 5000 false Chr5: 5363127-5368126 Arabidopsis thaliana
AT5G16390 5.0kb downstream 5.0kb downstream 7326 true Chr5: 5355801-5363126 Arabidopsis thaliana
AT5G16390 5.0kb downstream 5.0kb downstream 5000 false Chr5: 5355801-5360800 Arabidopsis thaliana
AT5G16390 10.0kb upstream 10.0kb upstream 12326 true Chr5: 5360801-5373126 Arabidopsis thaliana
AT5G16390 10.0kb upstream 10.0kb upstream 10000 false Chr5: 5363127-5373126 Arabidopsis thaliana
AT5G16390 10.0kb downstream 10.0kb downstream 12326 true Chr5: 5350801-5363126 Arabidopsis thaliana
AT5G16390 10.0kb downstream 10.0kb downstream 10000 false Chr5: 5350801-5360800 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376036 5261 Brassicaceae View MSA
123841026 5264 Brassicales-Malvales View MSA
124342707 5266 SBM View MSA
124244588 5268 Malvidae View MSA
124069770 5270 Rosid View MSA
123741689 5271 Pentapetalae View MSA
122795242 5272 Eudicot View MSA
122043144 5273 Angiosperm View MSA
121346326 5274 Embryophyte View MSA
123424113 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.567        
cufflinks 10.735       Low
cufflinks 15.902       High
cufflinks 11.351        
cufflinks 13.079        
cufflinks 16.735       High

0 Strain