Gene : CO A. thaliana TAIR10
Primary Identifier:  ? AT5G15840 Defline:  (1 of 1) K12135 - zinc finger protein CONSTANS (CO)
Genomic Order:  1483 Name:  ? AT5G15840
Secondary Identifier:  ? PAC:19668268
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G15840 0.5kb upstream 0.5kb upstream 2077 true Chr5: 5171182-5173258 Arabidopsis thaliana
AT5G15840 0.5kb upstream 0.5kb upstream 500 false Chr5: 5172759-5173258 Arabidopsis thaliana
AT5G15840 0.5kb downstream 0.5kb downstream 2077 true Chr5: 5170682-5172758 Arabidopsis thaliana
AT5G15840 0.5kb downstream 0.5kb downstream 500 false Chr5: 5170682-5171181 Arabidopsis thaliana
AT5G15840 1.0kb upstream 1.0kb upstream 2577 true Chr5: 5171182-5173758 Arabidopsis thaliana
AT5G15840 1.0kb upstream 1.0kb upstream 1000 false Chr5: 5172759-5173758 Arabidopsis thaliana
AT5G15840 1.0kb downstream 1.0kb downstream 2577 true Chr5: 5170182-5172758 Arabidopsis thaliana
AT5G15840 1.0kb downstream 1.0kb downstream 1000 false Chr5: 5170182-5171181 Arabidopsis thaliana
AT5G15840 2.0kb upstream 2.0kb upstream 3577 true Chr5: 5171182-5174758 Arabidopsis thaliana
AT5G15840 2.0kb upstream 2.0kb upstream 2000 false Chr5: 5172759-5174758 Arabidopsis thaliana
AT5G15840 2.0kb downstream 2.0kb downstream 3577 true Chr5: 5169182-5172758 Arabidopsis thaliana
AT5G15840 2.0kb downstream 2.0kb downstream 2000 false Chr5: 5169182-5171181 Arabidopsis thaliana
AT5G15840 5.0kb upstream 5.0kb upstream 6577 true Chr5: 5171182-5177758 Arabidopsis thaliana
AT5G15840 5.0kb upstream 5.0kb upstream 5000 false Chr5: 5172759-5177758 Arabidopsis thaliana
AT5G15840 5.0kb downstream 5.0kb downstream 6577 true Chr5: 5166182-5172758 Arabidopsis thaliana
AT5G15840 5.0kb downstream 5.0kb downstream 5000 false Chr5: 5166182-5171181 Arabidopsis thaliana
AT5G15840 10.0kb upstream 10.0kb upstream 11577 true Chr5: 5171182-5182758 Arabidopsis thaliana
AT5G15840 10.0kb upstream 10.0kb upstream 10000 false Chr5: 5172759-5182758 Arabidopsis thaliana
AT5G15840 10.0kb downstream 10.0kb downstream 11577 true Chr5: 5161182-5172758 Arabidopsis thaliana
AT5G15840 10.0kb downstream 10.0kb downstream 10000 false Chr5: 5161182-5171181 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361602 5261 Brassicaceae View MSA
123839284 5264 Brassicales-Malvales View MSA
124343070 5266 SBM View MSA
124240567 5268 Malvidae View MSA
124065921 5270 Rosid View MSA
123752107 5271 Pentapetalae View MSA
122792098 5272 Eudicot View MSA
122049836 5273 Angiosperm View MSA
123428935 5275 Viridiplantae View MSA
121345556 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.749        
cufflinks 0.35        
cufflinks 0.413        
cufflinks 0.336     Low  
cufflinks 0.061     Low Low
cufflinks 0.609        

0 Strain