Gene : AT5G18940 A. thaliana TAIR10
Defline:  (1 of 4) K08272 - calcium binding protein 39 (CAB39, MO25) Genomic Order:  1816
Name:  ? AT5G18940 Secondary Identifier:  ? PAC:19665246
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G18940 0.5kb upstream 0.5kb upstream 3069 true Chr5: 6325286-6328354 Arabidopsis thaliana
AT5G18940 0.5kb upstream 0.5kb upstream 500 false Chr5: 6325286-6325785 Arabidopsis thaliana
AT5G18940 0.5kb downstream 0.5kb downstream 3069 true Chr5: 6325786-6328854 Arabidopsis thaliana
AT5G18940 0.5kb downstream 0.5kb downstream 500 false Chr5: 6328355-6328854 Arabidopsis thaliana
AT5G18940 1.0kb upstream 1.0kb upstream 3569 true Chr5: 6324786-6328354 Arabidopsis thaliana
AT5G18940 1.0kb upstream 1.0kb upstream 1000 false Chr5: 6324786-6325785 Arabidopsis thaliana
AT5G18940 1.0kb downstream 1.0kb downstream 3569 true Chr5: 6325786-6329354 Arabidopsis thaliana
AT5G18940 1.0kb downstream 1.0kb downstream 1000 false Chr5: 6328355-6329354 Arabidopsis thaliana
AT5G18940 2.0kb upstream 2.0kb upstream 4569 true Chr5: 6323786-6328354 Arabidopsis thaliana
AT5G18940 2.0kb upstream 2.0kb upstream 2000 false Chr5: 6323786-6325785 Arabidopsis thaliana
AT5G18940 2.0kb downstream 2.0kb downstream 4569 true Chr5: 6325786-6330354 Arabidopsis thaliana
AT5G18940 2.0kb downstream 2.0kb downstream 2000 false Chr5: 6328355-6330354 Arabidopsis thaliana
AT5G18940 5.0kb upstream 5.0kb upstream 7569 true Chr5: 6320786-6328354 Arabidopsis thaliana
AT5G18940 5.0kb upstream 5.0kb upstream 5000 false Chr5: 6320786-6325785 Arabidopsis thaliana
AT5G18940 5.0kb downstream 5.0kb downstream 7569 true Chr5: 6325786-6333354 Arabidopsis thaliana
AT5G18940 5.0kb downstream 5.0kb downstream 5000 false Chr5: 6328355-6333354 Arabidopsis thaliana
AT5G18940 10.0kb upstream 10.0kb upstream 12569 true Chr5: 6315786-6328354 Arabidopsis thaliana
AT5G18940 10.0kb upstream 10.0kb upstream 10000 false Chr5: 6315786-6325785 Arabidopsis thaliana
AT5G18940 10.0kb downstream 10.0kb downstream 12569 true Chr5: 6325786-6338354 Arabidopsis thaliana
AT5G18940 10.0kb downstream 10.0kb downstream 10000 false Chr5: 6328355-6338354 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363793 5261 Brassicaceae View MSA
123833763 5264 Brassicales-Malvales View MSA
124336582 5266 SBM View MSA
124238519 5268 Malvidae View MSA
124069173 5270 Rosid View MSA
123738431 5271 Pentapetalae View MSA
122796867 5272 Eudicot View MSA
122042724 5273 Angiosperm View MSA
121345752 5274 Embryophyte View MSA
123425225 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.942        
cufflinks 7.936       High
cufflinks 6.466        
cufflinks 7.702       High
cufflinks 6.006       Low
cufflinks 6.525        

0 Strain