Gene : AT5G18380 A. thaliana TAIR10
Defline:  (1 of 3) K02960 - small subunit ribosomal protein S16e (RP-S16e, RPS16) Genomic Order:  1753
Name:  ? AT5G18380 Secondary Identifier:  ? PAC:19670078
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G18380 0.5kb upstream 0.5kb upstream 1213 true Chr5: 6090049-6091261 Arabidopsis thaliana
AT5G18380 0.5kb upstream 0.5kb upstream 500 false Chr5: 6090762-6091261 Arabidopsis thaliana
AT5G18380 0.5kb downstream 0.5kb downstream 1213 true Chr5: 6089549-6090761 Arabidopsis thaliana
AT5G18380 0.5kb downstream 0.5kb downstream 500 false Chr5: 6089549-6090048 Arabidopsis thaliana
AT5G18380 1.0kb upstream 1.0kb upstream 1713 true Chr5: 6090049-6091761 Arabidopsis thaliana
AT5G18380 1.0kb upstream 1.0kb upstream 1000 false Chr5: 6090762-6091761 Arabidopsis thaliana
AT5G18380 1.0kb downstream 1.0kb downstream 1713 true Chr5: 6089049-6090761 Arabidopsis thaliana
AT5G18380 1.0kb downstream 1.0kb downstream 1000 false Chr5: 6089049-6090048 Arabidopsis thaliana
AT5G18380 2.0kb upstream 2.0kb upstream 2713 true Chr5: 6090049-6092761 Arabidopsis thaliana
AT5G18380 2.0kb upstream 2.0kb upstream 2000 false Chr5: 6090762-6092761 Arabidopsis thaliana
AT5G18380 2.0kb downstream 2.0kb downstream 2713 true Chr5: 6088049-6090761 Arabidopsis thaliana
AT5G18380 2.0kb downstream 2.0kb downstream 2000 false Chr5: 6088049-6090048 Arabidopsis thaliana
AT5G18380 5.0kb upstream 5.0kb upstream 5713 true Chr5: 6090049-6095761 Arabidopsis thaliana
AT5G18380 5.0kb upstream 5.0kb upstream 5000 false Chr5: 6090762-6095761 Arabidopsis thaliana
AT5G18380 5.0kb downstream 5.0kb downstream 5713 true Chr5: 6085049-6090761 Arabidopsis thaliana
AT5G18380 5.0kb downstream 5.0kb downstream 5000 false Chr5: 6085049-6090048 Arabidopsis thaliana
AT5G18380 10.0kb upstream 10.0kb upstream 10713 true Chr5: 6090049-6100761 Arabidopsis thaliana
AT5G18380 10.0kb upstream 10.0kb upstream 10000 false Chr5: 6090762-6100761 Arabidopsis thaliana
AT5G18380 10.0kb downstream 10.0kb downstream 10713 true Chr5: 6080049-6090761 Arabidopsis thaliana
AT5G18380 10.0kb downstream 10.0kb downstream 10000 false Chr5: 6080049-6090048 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374465 5261 Brassicaceae View MSA
123840261 5264 Brassicales-Malvales View MSA
124350544 5266 SBM View MSA
124243493 5268 Malvidae View MSA
124069246 5270 Rosid View MSA
123741428 5271 Pentapetalae View MSA
122794496 5272 Eudicot View MSA
122042530 5273 Angiosperm View MSA
121347858 5274 Embryophyte View MSA
123423904 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 119.06     High  
cufflinks 224.25     High  
cufflinks 119.733     High  
cufflinks 210.041     High  
cufflinks 103.942     High Low
cufflinks 216.453     High  

0 Strain